Detail information of BGIOSGA037714_circ_g.2


General Information
CircRNA Name BGIOSGA037714_circ_g.2
ID in PlantcircBase osi_circ_003506
Alias 12:20463885|20466576
Organism Oryza sativa ssp. indica
Position chr12: 20463885-20466576  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA037714
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA037714_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA037714-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTTTGTCACCAGAAACATTCTCTCAATAAACTTGGGAGGAAGGATTGTTGGTTGTATGGCT
TTCTTATTCATGGACGATCTGTTTCCCATTTTCCAGggccaaatgttgcatgggaagattgaag
atttagttagttctttggaagacaagtttacctcagtattttccactgcacttctaaactgtag
taaggttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCAAATGTTGCATGGGAAGATTGAAGATTTAGTTAGTTCTTTGGAAGACAAGTTTACCTCAG
TATTTTCCACTGCACTTCTAAACTGTAGTAAGGTTCGGTTTGATGATGTCACAGTACAAGTCCG
ATATCTTGATGATTCCCATCTTGTCATATTGAGGACACATGACCTACAATTTGGTCCTGAGCTT
GTTTTCCGTTGCTCTCTGTTCAGAGGATTAGTTGGGTCTTATATGCCATCTAGAAAGAAGAATC
ATATGTTTGTCAAATGTGATCACTTTGAGTTTTTGCTGAAGGGGAATGATCATACAGATTGCAC
TGTATCTTTGACTGGGACAACTGCTTCTGTTAGGTTAGACAATCTCCATCTTACTGCTTTTGGA
ATTCATGTTGCCAGTGCATTCTGGGAAATTGCACCCAAATTTATTCCATCATTGATGGTGATAT
TGGAAATTACAAGCCAAAAGGAAGATTATGAGGTTAGGAGTGGTAGAGAGCTTTGGAAAATAGC
TGCACAAAAGCTTGAAAACTCAATAGCATGTCGCAGATTTTCTTTAAGGAAGGCCATGAGCTGT
GCCTCTTTCTGGCAGCACTATGTTCATACTTATATTTTGTTATTATCATTACTTGGATATCCTT
CTGGCGAAGTTATAAAAAGAAACTGCAGTAGGGTACAAAGCACCAGGAAAGTCAGGGAAACTAT
TAGAAATCATTTGAAAACTGTCAGTGAATTAGAGGAGAAGATCCCTGTAGAAGCTATTGCTAGA
GGACGAAGTGCAGCACGTTCAAAACTAACCGTGTCACAGCAACAGAGCGAGCAAGAATTATCAA
AAGCACTTTTGGTTTCAAACACATTGAAATTTCTCTCACCCTTGTTATATGTTTGGAAGTTTCT
TGTATTCATATGCTGGTCACTGTGGAGATTTATGAGCTCTAGAAGCAGAGGGTGCAAATCCAGT
GTGCAAAATTTTCCTTGTGCTTCTGATGATTCAGAAATCAAGGTACAGTTCAGCATCTGCCTTG
GTGAACTTTCTGTAACATTTTTACCCCTCAGTGATCACCACTTCACTGGTACACCAAAGTTAAA
TAATGGGAACAAGGCTTATCACATTGACACACCTTCAGTACATCTTGTAATAAAATCATCATCC
ATACTTTACACAGATGGTTTCACCACACAGTCATTTTTTTTCGTAATTGGTGAACTGAAGGCAG
ACGTTTCTGGTATACCAAAGTTGTTACAAGCAGCCAATGGCAGCATTACTAGGAGGAATTCATC
TTTTGGAACAGAAGAGTTTTCTGAAGATATTAATTCAAAGACAATACTCTGGAGTGACTCTGCC
AGTATGCATCCATTTTCTGGAAAACAGCCTGATGAGTCCTTTTCCTACAATGGTGATTCATCTA
TTGCCCTTCTACAGAGTGATATGGAGGAACTGTGGTCCTTCTGGACGGTAGTAAGCACTTTCTA
CAATGACTCAGGTGTGATGCATCATGAAAAACCTTCTGTTATTTTTGAATTCAAATCATTTCTC
ATTGATCCTTACAAAAGTACAAGTGGTTTTCAGCAATGTAGATTTACAGTTGGGAGGGTAAACC
TTGATGTGGATTATTTATGTGCTTCATCAACTTATCTCCTCTACAGGCAATTTGTGCACTACAA
AGAGCTGAAAGAACTAACTGAAAAATCAGCAGAATTTTCAAACAGAAGTGATAGCTGTGCGACA
CGTACAAGTGGAATTGCTGATAAATTGAGATCATTCAATCAGAGACTGAAGTTTTTGATTGCAG
ATGCTATTCCAATAAACACCCTTCAGATTTCAGCACTCATTGCAGGTCCAAGTATCAGGTTAAT
ATTTGATAAAAACAGCCTGTTGCAAAACAGCAAAAATAAGCAAGTCCCCCTGTTTTCTCAGATG
AATAACACGTCATGCATAACTCTCAGCCTTGCGTATGTTGAATGTGTTATCTGGCCAGCATCTC
TATCTTCTTTAACTCAGAAAGCTGATTTGCATGCCAAAGAATCACATGATACATTTGATGGAGT
GGAGGAGCAGCTAGAGTCTCATCGTTTAGCACTGGATAGTGCAGGACATGTTTATTCAGGGACT
GTTGTGTTGGATTCTTGCTTCAAATTTGCTGATTTAACTCTTCTAGTGGATCATATAGAGGCAA
ATCAGCAGTTTCACATTTTTGGACCAATGTCAGCCAATTTCCAGCTGTCAACAAGCAGGTAATT
TCCAATCTTGCATTCCTACGGCCTTGTGAGTTCAAAAAAAGATTTTAGCATGTCATCTTGACAA
TTTTTTTTGGTTGTGTTATGAGGTGTTGAGTCCAAATGGTTGTCCAAAATATCAAGTACCCAAA
GGAAATATAATGAATATGAGGAGTTCCATTTAACCTTTTTTTTAGCATTTGCATGCATTCCTTA
ATTTCAATAAGTTATATTCCTTTTTTAATTAATTTCTGCACTCCAACAAGTCAAGTATTTCTGT
TTCAATCTGCATGGTGCAGTGTCTATTTAGTTGAAGAATTTATGTTGACAATTCCTTCCATTGT
ACCTGTACACTTTCCAGGAAGTATGCCAGTTCCTTCTTTGTCACCAGAAACATTCTCTCAATAA
ACTTGGGAGGAAGGATTGTTGGTTGTATGGCTTTCTTATTCATGGACGATCTGTTTCCCATTTT
CCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 20464041-20466073(-)
20463892-20466573(+)
Potential amino acid sequence MTRWESSRYRTCTVTSSNRTLLQFRSAVENTEVNLSSKELTKSSIFPCNIWPWKMGNRSSMNKK
AIQPTILPPKFIERMFLVTKKELAYFLLVDSWKLADIGPKM*(-)
MLHGKIEDLVSSLEDKFTSVFSTALLNCSKVRFDDVTVQVRYLDDSHLVILRTHDLQFGPELVF
RCSLFRGLVGSYMPSRKKNHMFVKCDHFEFLLKGNDHTDCTVSLTGTTASVRLDNLHLTAFGIH
VASAFWEIAPKFIPSLMVILEITSQKEDYEVRSGRELWKIAAQKLENSIACRRFSLRKAMSCAS
FWQHYVHTYILLLSLLGYPSGEVIKRNCSRVQSTRKVRETIRNHLKTVSELEEKIPVEAIARGR
SAARSKLTVSQQQSEQELSKALLVSNTLKFLSPLLYVWKFLVFICWSLWRFMSSRSRGCKSSVQ
NFPCASDDSEIKVQFSICLGELSVTFLPLSDHHFTGTPKLNNGNKAYHIDTPSVHLVIKSSSIL
YTDGFTTQSFFFVIGELKADVSGIPKLLQAANGSITRRNSSFGTEEFSEDINSKTILWSDSASM
HPFSGKQPDESFSYNGDSSIALLQSDMEELWSFWTVVSTFYNDSGVMHHEKPSVIFEFKSFLID
PYKSTSGFQQCRFTVGRVNLDVDYLCASSTYLLYRQFVHYKELKELTEKSAEFSNRSDSCATRT
SGIADKLRSFNQRLKFLIADAIPINTLQISALIAGPSIRLIFDKNSLLQNSKNKQVPLFSQMNN
TSCITLSLAYVECVIWPASLSSLTQKADLHAKESHDTFDGVEEQLESHRLALDSAGHVYSGTVV
LDSCFKFADLTLLVDHIEANQQFHIFGPMSANFQLSTSRKYASSFFVTRNILSINLGGRIVGCM
AFLFMDDLFPIFQGQMLHGKIEDLVSSLEDKFTSVFSTALLNCSKVRFDDVTVQVRYLDDSHLV
ILRTHDLQFGPELVFRCSLFRGLVGSYMPSRKKNHMFVKCDHFEFLLKGNDHTDCTVSLTGTTA
SVRLDNLHLTAFGIHVASAFWEIAPKFIPSLMVILEITSQKEDYEVRSGRELWKIAAQKLENSI
ACRRFSLRKAMSCASFWQHYVHTYILLLSLLGYPSGEVIKRNCSRVQSTRKVRETIRNHLKTVS
ELEEKIPVEAIARGRSAARSKLTVSQQQSEQELSKALLVSNTLKFLSPLLYVWKFLVFICWSLW
RFMSSRSRGCKSSVQNFPCASDDSEIKVQFSICLGELSVTFLPLSDHHFTGTPKLNNGNKAYHI
DTPSVHLVIKSSSILYTDGFTTQSFFFVIGELKADVSGIPKLLQAANGSITRRNSSFGTEEFSE
DINSKTILWSDSASMHPFSGKQPDESFSYNGDSSIALLQSDMEELWSFWTVVSTFYNDSGVMHH
EKPSVIFEFKSFLIDPYKSTSGFQQCRFTVGRVNLDVDYLCASSTYLLYRQFVHYKELKELTEK
SAEFSNRSDSCATRTSGIADKLRSFNQRLKFLIADAIPINTLQISALIAGPSIRLIFDKNSLLQ
NSKNKQVPLFSQMNNTSCITLSLAYVECVIWPASLSSLTQKADLHAKESHDTFDGVEEQLESHR
LALDSAGHVYSGTVVLDSCFKFADLTLLVDHIEANQQFHIFGPMSANFQLSTSRKYASSFFVTR
NILSINLGGRIVGCMAFLFMDDLFPIFQGQMLHGKIEDLVSSLEDKFTSVFSTALLNCSKVRFD
DVTVQVRYLDDSHLVILRTHDLQFGPELVFRCSLFRGLVGSYMPSRKKNHMFVKCDHFEFLLKG
NDHTDCTVSLTGTTASVRLDNLHLTAFGIHVASAFWEIAPKFIPSLMVILEITSQKEDYEVRSG
RELWKIAAQKLENSIACRRFSLRKAMSCASFWQHYVHTYILLLSLLGYPSGEVIKRNCSRVQST
RKVRETIRNHLKTVSELEEKIPVEAIARGRSAARSKLTVSQQQSEQELSKALLVSNTLKFLSPL
LYVWKFLVFICWSLWRFMSSRSRGCKSSVQNFPCASDDSEIKVQFSICLGELSVTFLPLSDHHF
TGTPKLNNGNKAYHIDTPSVHLVIKSSSILYTDGFTTQSFFFVIGELKADVSGIPKLLQAANGS
ITRRNSSFGTEEFSEDINSKTILWSDSASMHPFSGKQPDESFSYNGDSSIALLQSDMEELWSFW
TVVSTFYNDSGVMHHEKPSVIFEFKSFLIDPYKSTSGFQQCRFTVGRVNLDVDYLCASSTYLLY
RQFVHYKELKELTEKSAEFSNRSDSCATRTSGIADKLRSFNQRLKFLIADAIPINTLQISALIA
GPSIRLIFDKNSLLQNSKNKQVPLFSQMNNTSCITLSLAYVECVIWPASLSSLTQKADLHAKES
HDTFDGVEEQLESHRLALDSAGHVYSGTVVLDSCFKFADLTLLVDHIEANQQFHIFGPMSANFQ
LSTSRKYASSFFVTRNILSINLGGRIVGCMAFLFMDDLFPIFQGQMLHGKIEDLVSSLEDKFTS
VFSTALLNCSKVRFDDVTVQVRYLDDSHLVILRTHDLQFGPELVFRCSLFRGLVGSYMPSRKKN
HMFVKCDHFEFLLKGNDHTDCTVSLTGTTASVRLDNLHLTAFGIHVASAFWEIAPKFIPSLMVI
LEITSQKEDYEVRSGRELWKIAAQKLENSIACRRFSLRKAMSCASFWQHYVHTYILLLSLLGYP
SGEVIKRNCSRVQSTRKVRETIRNHLKTVSELEEKIPVEAIARGRSAARSKLTVSQQQSEQELS
KALLVSNTLKFLSPLLYVWKFLVFICWSLWRFMSSRSRGCKSSVQNFPCASDDSEIKVQFSICL
GELSVTFLPLSDHHFTGTPKLNNGNKAYHIDTPSVHLVIKSSSILYTDGFTTQSFFFVIGELKA
DVSGIPKLLQAANGSITRRNSSFGTEEFSEDINSKTILWSDSASMHPFSGKQPDESFSYNGDSS
IALLQSDMEELWSFWTVVSTFYNDSGVMHHEKPSVIFEFKSFLIDPYKSTSGFQQCRFTVGRVN
LDVDYLCASSTYLLYRQFVHYKELKELTEKSAEFSNRSDSCATRTSGIADKLRSFNQRLKFLIA
DAIPINTLQISALIAGPSIRLIFDKNSLLQNSKNKQVPLFSQMNNTSCITLSLAYVECVIWPAS
LSSLTQKADLHAKESHDTFDGVEEQLESHRLALDSAGHVYSGTVVLDSCFKFADLTLLVDHIEA
NQQFHIFGPMSANFQLSTSRKYASSFFVTRNILSINLGGRIVGCMAFLFMDDLFPIFQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021