Detail information of Os05g0593800_circ_g.1


General Information
CircRNA Name Os05g0593800_circ_g.1
ID in PlantcircBase osa_circ_042212
Alias NA
Organism Oryza sativa
Position chr5: 29571847-29571913  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0593800
Parent gene annotation Similar to Dual specificity kinase 1. (Os05t0593800-01)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-GC
Number of exons covered Os05t0593800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGTACGACTACGTGACTGGTCAGCTTCAGTGccctgatctttggaatgcccccggacttgca
tct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 67
Transcript exons: 29571847-29571913
CCCTGATCTTTGGAATGCCCCCGGACTTGCATCTGTTGTACGACTACGTGACTGGTCAGCTTCA
GTG

Genomic sequence CCCTGATCTTTGGAATGCCCCCGGACTTGCATCTGTTGTACGACTACGTGACTGGTCAGCTTCA
GTG
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study