Detail information of BGIOSGA006708_circ_igg.2


General Information
CircRNA Name BGIOSGA006708_circ_igg.2
ID in PlantcircBase osi_circ_011536
Alias Chr02:9817924_9822358(MH63RS2), Chr02:10100823_10105264(ZS97RS2), Chr02:9817924_9822358(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 10864825-10869268  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA006708_circ_igg.1 BGIOSGA006708_circ_igg.3 BGIOSGA006708_circ_igg.4 BGIOSGA006708_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAAAAGAAGATACTCACAGCTTCAAACATCGTGAGTTTTTACAGTTACAGTGTTTCCTTTTC
TTTGGACTGGCATTTTTTACTTCAACAGCTGGCTTCccgtttatatttccacgtgtgataagca
cacgaagataatctcgcagccctgtcaatactattctttcttgatcagcatttagctcagaaat
atcctgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGTTTATATTTCCACGTGTGATAAGCACACGAAGATAATCTCGCAGCCCTGTCAATACTATTC
TTTCTTGATCAGCATTTAGCTCAGAAATATCCTGATCACATGAAGGCACCACAAATGGACTTCT
ATAATCCTCATTTCCGAATGTAGTATCCATTTCATCACACATTAGTGCTTGTGTTCCTGGTGAT
GCAGGCCTAGAATCTTTAAAAGAGTTAGCTAGATGGGGCTCTGTTCCATTAATGTTCTGACGAT
CTATACAGGCCTTGTTTTGGATGTCCTTTAGAGAAGCTTCCTTCAAGTTTTGCTCTTTGGTCTT
ATCATTGTTTATTTCATCATTTGTCTGATATTGCTTCTCTGCTTGCATCTCCACTTTATTGCCT
GCAAATATGAGCAATAATATTTGGATTTGAGCACAAAATTACAGTGAACCTAATCACACACAAC
TTACAAAATAAGGTTTTCCTTTTACAAGTGGTATACAAAATTTAGTATGAGGTACAGTTGCTTA
TGAGACAACAATCACCATATCAATGTCGAAAGTCATGTCCATTCATGAGTCATGAGTGTGATAG
ACGTATGCCATACATTCCATTTTGTCTCTAATAAAGATATAGTACTATATATAATAAGTTTTAT
ACATCGACTTCTATTTATCCTGAAGCTCATAGTGCTGGCACAGCCTTGCTCCATTTTCTGTTGT
ACGGAAATTTTACGCTATCTTTTTTTTTTTTTGCCTCTTTATGGCCAGTTGGATGTTTGCTTTG
ATATGTGCATGTGCCTGATTTTCGTCTGCGTTCTTATTCAAGTAGACTGGCGTAGAAGCAAAAT
GTAGTTCAAAGCCCACAACAATTAGCAAACTATTTGCAATTTTTTAGGCGCTATGTCCTAGAAA
AATACAAAAATATATATATGAATTTGTGGTTAAAAAAACAAGTTTTATGTTTTTCTTCTATTAA
CATGATGTATTGATGTCCATGATCTGCTATACCAAAACAATGTTTTGATACAGATGAACCACTT
TGTTGGTCGAGAATCTGGAGCTGCCAGTATTCAACCAATTACCATGGAAGCATGGCTTACTGAA
TGGTTGAGCCAACTATTTTTTCACATGTTACATGGATATCTTTGCTCTGACAAAAATAACCGAT
GGAACATCTTTTTTCATGGTTGATCAGCTTATTTCCATGAAGCACTTGATATACAAAAGTTCAT
TCAATGGTAGGTAGCATATGAGAATATGAAAAAACTAGTTGGAATGGAAAATGAACAGTGGCTG
TGAAAAGGAAATTGTGGGATGTTATTTAGTGTGATACCACCAGGTTCTGGAGATGCTGCCTGCA
CTATAAACGAAATCATGATCTAGTTGCATGTGTTTTTCTAAAATCACAAAGTACTAGTTTTGTA
TTCCTATAAAACAGGGTTTCCTGCTTTCCAAAATGAGATTCACTTAATCGAATAACTCTTAAGA
AATGAGTTTCCTTATCCTAGTAAAAATAAAAGTTTTGGGAAAATAACTTCCAAAGTACATATAC
CAAATTGTGTTTTATGAAATCAAATGATCCAAACAATCTAATAGAGTATAACGGCAAAGTGTCA
TCTAAATGTCATCGCACCTCTTAATACTGATGCACACGTTCACACGGAACAAATGATTTTTCAA
ATTTAGGTTGTTTTGAATAATTTAGCTATAAAAAAGAAGACAGGACTCTGTACCAGCTTTTGTG
AGGAATGCTTCTGGTGCCTTTCTGCACGCAACCAACGCATTCTTGACAAGATCATTGACTTCAA
TAAGAGGGATAGTGTTTGCTAGTGGAGACCTGAGAAAATATTATATTTCATCAAAAGAAGAGAC
AGTAAGCGGTAGAGTATACCTCTTATATAACATATTTTAGTATAACTAAATGATGCTGCCATAT
AACCTTTGAGATAAACCCATGAAGACTTTCAAAAATATTAAAGTACTAGGCTGAGCCATCTGAA
ATGGCACTAGTTACAGGAAGCTCATGACACACTGAAACTAGATTACACATTGGCATAGTAGAAC
TATCTAAAAGGCCAGAAGGGACACTTGTAACCTATGTTAATTAAAGAATTAAGAACCTCAAAAT
GGCTTATCTGAGTACATAGACCTTTTTTTTTCTGTTCTTGAGTTATTCCCTTTGAGAAAATATA
AATATAGTTCCGCTTACCTATAGATCATTTCAGATGATTTGCTTTGGTAATTGATAGCAATATC
CCCTCCAAATCCTGTGCAAGAGGATGCAAGCTGTGAAACATCTGCATGGTCAGTCTAGCACATA
ACAGTAACAACAAATTCTAGTCCACAAAAACTTGCAGCTGGCCATACCAATTAGAACATACCGG
TTGAAATTGTGCTTCTGACAAAATTTGTTCTCCAAGGGAATTTTCTTGATATTTCTTCCTACGC
ACTGGAGAACTTTTGTATCCTAAAGATCCAGTGGCACCACTCAGAGCAAAGTTAGCTGCTTCTT
GAATGTGATTTCTATCAGATGCATTTTTCATTTGAACTAAAGCTTTTCGCTCTTCGCTTCCTTC
AAAATTCTTACAGTCCTGACATCTACAGTTCTTAGAGCATAGGATGTTTGCTTGGAAGCATTCA
CAGTACTTTTTTAAGCACTCTGACTTCCTGCAGTGACAGCCCTTATTGTGCTTTGGTATCGGAG
GTATTGCTTCAGAATTATCCTGAAAGTCACATAAGACTGTATAAACACATGTAGCTCAAGGTAA
AAAAAAAAATGGACTTGGCATTTTAATGGGGAAATAACAAATTATTCCTAAACATTGGAGTTAG
AATCATTTTTAGTGTTTAATTTCCAGAATCCTGCTAAAAGATGGGACAAGAGGACATTAAAAAA
AATGAATGGATTAATTAGTACTAATGGAACATTAAGAATTATATAACATTACCCACAAATCCAA
GATCACTTTGGTATTTTATATTTTACTTAAACCATGTAAACAAATATTTTAGTATTGCAGTGTA
AATGAAATGAAGAGCATAATTACATTGTGCCTGCGTAGAAATGTACATTCAATTCAAGGACAAA
ATAAAGTGCGTGAATTCAAAATAAAAATGAAAAACTATAAAAAGCAGGGAATAATGTCAATATG
ACATGAAAGCTCTGGATGCTGACTGTATTGAGCAATCAGGGGTAGGTGTATGAGATTATGCATA
AAACCATACCAGTAAACCACATTGAAACTTACATTGCAAACTCATTTATCAAAATAAAAATGGA
ATAGAGGGACACTATCATGGCCATTTTTAAGTCCTTGTCACAACCGAAGCAAGATCATGAAAGG
TGTGTACCAAAAAAATAAAGCAGAGCTGTTGGTGAATTTGTTTCATTTCATCTATATGAAATTC
ATTCAGCTCATGCATGTTTTGGAATTATATTTCTGGATTTGATCAGGATAACTACTGAAGGGGA
AAACGAGAACTGGTTTAAGGTTACAACATGGTATAGATGTAGATAGTATGTCATATTAAAGAGT
TATATTGGCGAATAGTAGTACCTTTCGAACAGTTACAGTATTTGGACTATTTTCAATTTTGGGC
TGAAATGCAAGTGGATTACGGAGGAGAATTGTTTCAATAGCTTCCTTCCTTATGTTTTCATTCT
CAATCTTGTTTCCACATGGTGAACAATGGCATCCATCACAATATACACGTGCTGCAAAACACTC
ACAATACCTAACAAACAAATATCAAGCTAGTGAGCTTGTTATAAGCATAATGGGCATGATGGTG
TTTCATCATCATAAAGTCAGCTGATAACAAACATCAGTACGTTGCACTTATTGTTTGCTAGCAG
TCTGCCTAGGGAGAATGTGCCTTAAAAAAAGCAATCAGGAAGAATTGAATATTATAAAACACAG
AGACAGGACAATTATAATTAGAATAGCAGACAAGTGCATCAAACTCAAACTGCAAAGGAAATAA
GATTACCACAAGAGAAAAAGGAAACATTAATCCCCTACTATGAACACAACGCAACAGTTATACT
CTTATCTTTCCACTGACTACACACACTAATGTACATGGCATACCATTTAGGAAGCTATTTAGGT
ACCGTTAATGATGTTGTATGAAGGAAAAATCAAACGTAACTCCTACCGGTATTGACCATCATAA
CTGACCTGTTTCGAGATTCTTAAGATGGTACTAAACATTTACCTGAGAATACATATTGATAATA
GTTGCTTGGAAGCCTACCTTTTGCAAATAACATGTAAAAGTTATCCAGTACTCTATTTCAAAAC
ACTATATTTTCCCTTGCTGTAATCATGACACTGCATTTACAGTTTTACACCCAAAAGAAAAAAG
AAGATACTCACAGCTTCAAACATCGTGAGTTTTTACAGTTACAGTGTTTCCTTTTCTTTGGACT
GGCATTTTTTACTTCAACAGCTGGCTTC
Conservation Information
Conserved circRNAs osa_circ_014241
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021