Detail information of AT1G53190_circ_g.3


General Information
CircRNA Name AT1G53190_circ_g.3
ID in PlantcircBase ath_circ_007111
Alias 1:19839310-19839997
Organism Arabidpsis thaliana
Position chr1: 19839310-19839997  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G53190
Parent gene annotation At1g53190
Parent gene strand +
Alternative splicing AT1G53190_circ_g.1 AT1G53190_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered AT1G53190.1:3
AT1G53190.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGGCACGAGTATCATGCAGAGTGCTTGGAGAAATGGCTGATTGTGAAGAACGTTTGCCCAATC
TGTAAATCAGAGGCACTGGTCATGGAGAAGAGAAAGgaagttgcgcttttggagtttggagact
tccttggtggttctggaaataatcacattgatcatcatcgagatatgcgattggacatcgagga
aatgtctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTTGCGCTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTGGAAATAATCACATTGATCATC
ATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACGAGGTGAGCCCTTCATTACTCTTTAC
CGATGTAGTTATCAGAGTTAGGAGCTAAAAGTTGCTGTCTTTTATTATCTTTTCCCTGAGAAGA
TCTTGGGTTTCGCATGAGCAGAGAATTCACAATGCAATTTTCTGTGATCATAGTTAGGATTTTG
TTTATCTGATTTGTCACTGGGGTTTGAACAGGAGCTTCTTGCTTTGAGTGAGCGAATTGGAACA
GTAAACACTGGGTTGCCGGAGGAAGATGTTAAGAATCATTTGAAAACAAGAACATGTTCTGGAA
TCAACTTTGAAAAAGAGTCGTCGTCCCCACGAACTAAAGATTTAGAAACCGAACCGTGCACTAT
ATGTCAGGTAAAAAAACTAGCCAAAATGATCAAAGCTTTGTAATGGGCCGCACAGGCTTGGAAT
TAGAGCTCTGAACAACTCTCTCATTATCTTTACAGGAAAGCTTCAAGAACGAAGAAAAGATTGC
GACTTTGGATTGCGGGCACGAGTATCATGCAGAGTGCTTGGAGAAATGGCTGATTGTGAAGAAC
GTTTGCCCAATCTGTAAATCAGAGGCACTGGTCATGGAGAAGAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.196632772
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020