Detail information of Os10g0571300_circ_g.2


General Information
CircRNA Name Os10g0571300_circ_g.2
ID in PlantcircBase osa_circ_008100
Alias NA
Organism Oryza sativa
Position chr10: 22651207-22653175  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0571300
Parent gene annotation Similar to Protein kinase-like protein. (Os10t0571300-01)
Parent gene strand +
Alternative splicing Os10g0571300_circ_g.1 Os10g0571300_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0571300-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGACTCAGCAAGTGCAAGAGATGCTGAATACCAAGAAGTTTGGTGACATTGCATTTAGAGAC
AAGGATTTCAAGACTGCAATTGACTACTACTCCAAGgggataagcagcccttgccatgggaaat
gcggttaagggttgcgtattacattgcgcaggcactcgatcactgcaatgccgagaaccgaaaa
atctatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 788
Transcript exons: 22651207-22651340,22651529-22651634,22651808-22651893,22
652283-22652471,22652559-22652717,22653062-22653175
GGGATAAGCAGCCCTTGCCATGGGAAATGCGGTTAAGGGTTGCGTATTACATTGCGCAGGCACT
CGATCACTGCAATGCCGAGAACCGAAAAATCTATCATGACTTGAATGCTTATAGAGTACTTTTT
GATGAGGAAGGTGATCCTCGGCTGTCAAGTTTTGGACTAATGAAGAACAGCCGCGATGGGAAAA
GTTATAGCACTAATCTGGCTTACACCCCGCCTGAGTTTCTACGAACTGGCAGAGTCATCGCCGA
GAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCT
AGCCATGCACTTGATTTGATAAGAGGGAAGAATATACTGTTGCTCATGGATTCCTCCTTAGAAG
GGCAGTATGCTAATGAAGATGCTTCAAAACTAGTTGACCTTGCGTCGAAATGCTTGCAATTTGA
AGCGAGGGACAGACCCAATATAAAGTATCTCTTGTCTTCTGTTGGGCCTCTTCAGAAGCAAAAG
GAGGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTATTCTTT
CTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCTCAAAAC
AGGTTACAAAGATGAAGAAGGTGCAGAAAATGAGCTGTCCTTTCAAGAATGGACTCAGCAAGTG
CAAGAGATGCTGAATACCAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTCAAGACTG
CAATTGACTACTACTCCAAG

Genomic sequence GGGATAAGCAGCCCTTGCCATGGGAAATGCGGTTAAGGGTTGCGTATTACATTGCGCAGGCACT
CGATCACTGCAATGCCGAGAACCGAAAAATCTATCATGACTTGAATGCTTATAGAGTACTTTTT
GATGAGGTATGTTTGTTGCTGCTAGTACATTCCACTCAAAACACCTTTTGTTTCTGCTGATTTT
GCATTGCTTTTCACTTCCTTCCTCCTGTGAACTCGGATGCTTTCTGATCAAAATTTACTACTTT
CTGAAGCTTTGCTGATGTCTGTAACTACCGAGAGAATTCTAACTTTGGCATGATTTATTCTATC
AGGAAGGTGATCCTCGGCTGTCAAGTTTTGGACTAATGAAGAACAGCCGCGATGGGAAAAGTTA
TAGCACTAATCTGGCTTACACCCCGCCTGAGTTTCTACGAACTGGTAGGAATTTACACATGATC
CTTATTACCGCACTCATGGGCACCTTACTCTATTGATGTTTTCCAGCAAAAATGAAACATGTCA
ACTTATTTCAAGCTTGCTATATATTTACTCCCAAGTACTAACATTGTTTGACTGCACCGAACAA
TTTGTGCATGACACTTGTATGACAGGCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAA
CAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATGTATGCTTCGTTTAAAT
CCTTACTTTTCTCAAGAAATATATATATCAGCGCTTCTCCTTATCATTACTCTCATATCCTGGA
TAACACTGCATCTGTATTTAATGTCACATTGACAACTGATAAAAAGTGTTATGGACTGCAATCG
GATTTGAACCTTAACCTTTAACCTACTGATGTCCACTAAATTTGTATAACAGACAGTGGCCTCT
TGTCTCAAATAACAGACCATAGACTTCTAGTAGAATATGTGACAATGAACTTATTCCTAGGATG
CCGTGCATCTGATAGAGCATGACTGCGGAATAGTGAATTTATGCCAAGGATATTTTATTGTCAA
CTATCAATGTTTATGTCAGTAGGTTTCTCACTTGATTTGTATGGAATTCCAGGCACTTGATTTG
ATAAGAGGGAAGAATATACTGTTGCTCATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGAAG
ATGCTTCAAAACTAGTTGACCTTGCGTCGAAATGCTTGCAATTTGAAGCGAGGGACAGACCCAA
TATAAAGTATCTCTTGTCTTCTGTTGGGCCTCTTCAGAAGCAAAAGGAGGTAAATAACTTGACA
GCCTTTTGTCGGCTGCTAATGTTTTTCATTGCATTTGGTAACACCATTTATTTCTTATATCAAT
CATTCTAGGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTAT
TCTTTCTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCTC
AAAACAGGTTACAAAGATGAAGAAGGTGCAGAAAATGAGGTAACTATCTTGCTGTAAAGTTGTT
GCATTTGTTTTCCTAGTCTATGATGCATCTGAGCTATATCACACACTGAATTTACTCATTCTTG
AAATGCCCTAGAAAACATGGATTGTGCATCATGATCTATTTTCTTGCTATGAAGAGAGATTACT
TGCATTCACCAACCACCACATTCATGCTTGTTTATAATTTCAAAAGCTAACCTCATTTTATGTA
CCTTAGCTCTTCTCTTGCTGTCCCCACTTGCTGAAATATTTCAGAAATTATGGAGTCACATTCA
TTTGGTTTGTTAAGATAAGCTAGTTTTATTTTGTGCATGTTTATGGTGATGTAAAAACTGAAGC
TGTCCTTTCAAGAATGGACTCAGCAAGTGCAAGAGATGCTGAATACCAAGAAGTTTGGTGACAT
TGCATTTAGAGACAAGGATTTCAAGACTGCAATTGACTACTACTCCAAG
Conservation Information
Conserved circRNAs osi_circ_008731
PMCS 0.26886133
Functional Information
Coding potential Y
Potential coding position 22651234-22651239(+)
22651229-22652567(-)
Potential amino acid sequence MRLRVAYYIAQALDHCNAENRKIYHDLNAYRVLFDEEGDPRLSSFGLMKNSRDGKSYSTNLAYT
PPEFLRTGRVIAESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNILLLMDSSLEGQYANEDAS
KLVDLASKCLQFEARDRPNIKYLLSSVGPLQKQKEVASHVLMGITKATAVLPTILSPLGKACSG
MDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQEMLNTKKFGDIAFRDKDFKTAIDYYSKGI
SSPCHGKCG*(+)
MARAAYPLGVVVNCSLEILVSKCNVTKLLGIQHLLHLLSPFLKGQLIFCTFFIFVTCFEQYIMY
CCKVHTGTGLPKGRKNSWQHRRGFCNTHQHM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017