Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA018992_circ_g.4 |
ID in PlantcircBase | osi_circ_005882 |
Alias | 5:31801|33280 |
Organism | Oryza sativa ssp. indica |
Position | chr5: 31801-33280 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA018992 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA018992_circ_g.3 BGIOSGA018992_circ_g.5 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA018992-TA:6 |
Conservation Information | |
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Conserved circRNAs | osa_circ_026127* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
33072-33138(-) 31836-33248(-) 33263-31877(+) |
Potential amino acid sequence |
MDGALADTQQGGVSTSTSPYDDKDALKSAYTKEFRFCEKVKDKLEPEAYQEFLKCLHIYSQEII TRSELKNLVNDILQHYPDLMNGFNDFLEQCENIDAFLEGVFNKRQTSQIVKIVEKGSALNSKEG ATHKATTFSSKDKYNLCKPISELDLSNCQRCTPSYRLLPKNYPMPPASCRTDLGASVLNDLWVS VTSGSEDYSFKHMRKNQYEESLFRCEDDRGRGLIHQLSIVTSVLIALILRMIPTEGVLTREGMV RLIAVEKIMKRT*(-) MKKACLDVKMTEGEGLSINCRS*(-) MDKPSPSVIFTSKQAFFILILPHVLKRIILTS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |