Plant Circular RNA Database

Detail information of Os08g0453800_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os08g0453800_circ_g.3
					
						ID in PlantcircBase
						osa_circ_037280
					
						Alias
						Os_ciR1750
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 22223904-22226141  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os08g0453800						
					
						Parent gene annotation
						
							Serine/threonine protein kinase-related domain containing protei
n. (Os08t0453800-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0453800_circ_g.1 Os08g0453800_circ_g.2 Os08g0453800_circ_g.4 						
					
						Support reads
						9/2
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0453766-01:7
Os08t0453766-01:7
Os08t0453800-00:7

General Information
CircRNA Name	Os08g0453800_circ_g.3
ID in PlantcircBase	osa_circ_037280
Alias	Os_ciR1750
Organism	Oryza sativa
Position	chr8: 22223904-22226141 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os08g0453800
Parent gene annotation	Serine/threonine protein kinase-related domain containing protei n. (Os08t0453800-00)
Parent gene strand	-
Alternative splicing	Os08g0453800_circ_g.1 Os08g0453800_circ_g.2 Os08g0453800_circ_g.4
Support reads	9/2
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0453766-01:7 Os08t0453766-01:7 Os08t0453800-00:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGATATCATAAAGCTTACCCCTTCTTTGCCATCATCCAGTTTGATTTTCTTAAGTGCTGCTCTT
TCTCCAGTTATAATATCCATAGCCTCGAATACTTCActcagttctgccaggaaataatggtttc
ctcaataaaaattctgcaaatatgcaaccaacagaccatatatccactgcttcagcataatttg
tggcaccg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 607
Transcript exons: 22223904-22224021,22224159-22224276,22224361-22224433,22
225501-22225598,22225757-22225783,22225866-22225956,2222
6060-22226141
CTCAGTTCTGCCAGGAAATAATGGTTTCCTCAATAAAAATTCTGCAAATATGCAACCAACAGAC
CATATATCCACTGCTTCAGCATAATTTGTGGCACCGAGGAGCAACTCTGGGGGTCGGTACCAGA
GAGTAATAACATGATTTGTGAAACTTCCGTCTCTAGTGAATGGCCTTGCAAGGCCAAAATCAGC
GAGCTTTAACAGCTTACCACCACCACTTATTAGAAGATTAGCCCCTTTGATATCACGATGAAGT
ACATTGTTGACATGGCAGTAGTGCAATCCTTTTAACAACTGCTCCATATAATACTTGACTTGGG
ATGGGGTACTGTGGTGCAAGACTTTCTTCAAATCATGATCCATGTATTCAAAAACCATATAGAT
ATCTCCCCTATACATGTAATCATCTGATCCTCCTGCTCCATGTGCTGTACCAGGAGATACTACA
ATTTCTTTCAATCTGATGATGTTCTCGTGATCCAGCTTTTTTAATAGTTTAATCTCACGCAAGA
TTTGGCGTGGAAACCCTTCTTTGCCATCATCCAGTTTGATTTTCTTAAGTGCTGCTCTTTCTCC
AGTTATAATATCCATAGCCTCGAATACTTCA
						
					

						Genomic sequence
						
							CTCAGTTCTGCCAGGAAATAATGGTTTCCTCAATAAAAATTCTGCAAATATGCAACCAACAGAC
CATATATCCACTGCTTCAGCATAATTTGTGGCACCGAGGAGCAACTCTGGGGGTCTAAGAGCAG
TTTGTAGAATGAAGGAAATTGATATCAGCAAAAGGAGATAGGAAAAAAATACAACACAAGTAAA
CATGTTGGGGTTGGACAAGATGATATATAATAGCATAAGTCCTTAATTCTTTATTCGACTTACC
GGTACCAGAGAGTAATAACATGATTTGTGAAACTTCCGTCTCTAGTGAATGGCCTTGCAAGGCC
AAAATCAGCGAGCTTTAACAGCTTACCACCACCACTTATTAGAAGATTAGCCCCTATAAATGGT
AACAAGTAATCTGAGGGTCGAATAAAAATGATCATAGATATAAAAGTTGAAGATACATTCAAAC
AGAACAAACCTTTGATATCACGATGAAGTACATTGTTGACATGGCAGTAGTGCAATCCTTTTAA
CAACTGCTCCATATAATACTACAGAAATGAAAATAGACAACAATGAATAGGCTGTTCTTAAGGA
GTACAATCAACTTGTATCCTGCTTGGTGAAGCACTGAAGCTTAATTTGTTTACAACAGCTTGCA
TAAAACTATACAAGAGAAACTGAGCGAGAGAAGAATCTTTTGTTTTGGTAAGCTTACCGTTCAA
TGTTAATTGTTACAGCAAGTTAAATCATATTTCTGCAGCAAGTATGTATTAGTGGAAATTTTAT
TCTGTTGGAACCTGCAGGTACCACGCTAACCATGTGAATTGTTGCATGCAATATTTTATCCTAT
CCGATAGGCATCAAGGCACAAGACAACATCCCTACCACTATCCCAACCTCCCTCGTCCTTGATA
CCATCACAAATACTTATTTGTCCTTCACATACTCCTTGCTGCAACCCTCAGCCCTCCTTGGTCA
CTGTTGCCAGACCTGGTTTCCCAATTCCCATAAATGTCACCATGGTCCACAAACCACAGATGGC
CTCTCACTCTATCCATCCCTGGCATGCAGCAGTAGTGTGGAAACACTTGAAACCAGGCCAAGTT
AGTTGTTTGAGGCTACTGATGAAGGAGGTGACAGGATCCATGTCCAGGAAAAATAAAAGCAGGT
ATTGATCCACCCCCCCTATGGTGAATTCTTGGAGAACTTGAACCAATTTTGGAAGTTTTGTGAT
TTACTAGTTTAAATCTCTCAATTCTCAGGATGAAAGCAGAAAATTCCTAATCCAAGACAATAGC
TCCTTTAATCTTTAGCTCAAAATTCCATAGTCCACTTTGAAAGTACGAGAAGAAAGGGGGCATC
TCTCTAAAACACAGGGGCGGAGCTAGAGTCATTAGGAGGGGTTCCCAGGAACCCGGTGAAAAAA
AATTTGTAACTAAACCTTACCTATTTTCACCATGTGTGCACCCCCCTCAATATAAATTTAGGCA
CCCATATCAACTTAAACTCGATATAAAGTGAGTAAATTAAACAAGTGGCACCCCCCCTCCATTT
CGTTCTAGCTCCGCCCCTGCTTAAAACACATGGGATAGAAGAACTACATATACCAGAGTACCTT
GACTTGGGATGGGGTACTGTGGTGCAAGACTTTCTTCAAATCATGATCCATGTATTCAAAAACC
ATATAGATATCTCCCCTATACATGTAATCATCTGCAGAATTTTAGCATAGGTTATGAATGATTT
CTGTGCATTGATCAATATGAAGAAAAAATTGAGCAGAATGAAAAATTATTAAACAAAACAAATA
AAATATATCAGCATTAGCACATCAATGGAGAATGCAAGAAACAAAGAATAAAGTAACTGACCTG
ATCCTCCTGCTCCATGTGCTGTACCTGAAAAATATTTACACATGGTGGGAATATGCAGTTTTCT
GTACTCTTAGACATCTTGAAATTGCTAGAAGAAATTTGTTACCAGGAGATACTACAATTTCTTT
CAATCTGATGATGTTCTCGTGATCCAGCTTTTTTAATAGTTTAATCTCACGCAAGATTTGGCGT
GGAAACTACAAAAGTATGGATCAGATCAGAGAAGTGCAATGTTCTTCAATGAACACGGTTGCTC
ATTAGAAAGAGTAGCCATAGCTTTGTGGATATCATAAAGCTTACCCCTTCTTTGCCATCATCCA
GTTTGATTTTCTTAAGTGCTGCTCTTTCTCCAGTTATAATATCCATAGCCTCGAATACTTCA
						
					

			
		

Sequences
Splice junction sequence	GGATATCATAAAGCTTACCCCTTCTTTGCCATCATCCAGTTTGATTTTCTTAAGTGCTGCTCTT TCTCCAGTTATAATATCCATAGCCTCGAATACTTCActcagttctgccaggaaataatggtttc ctcaataaaaattctgcaaatatgcaaccaacagaccatatatccactgcttcagcataatttg tggcaccg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 607 Transcript exons: 22223904-22224021,22224159-22224276,22224361-22224433,22 225501-22225598,22225757-22225783,22225866-22225956,2222 6060-22226141 CTCAGTTCTGCCAGGAAATAATGGTTTCCTCAATAAAAATTCTGCAAATATGCAACCAACAGAC CATATATCCACTGCTTCAGCATAATTTGTGGCACCGAGGAGCAACTCTGGGGGTCGGTACCAGA GAGTAATAACATGATTTGTGAAACTTCCGTCTCTAGTGAATGGCCTTGCAAGGCCAAAATCAGC GAGCTTTAACAGCTTACCACCACCACTTATTAGAAGATTAGCCCCTTTGATATCACGATGAAGT ACATTGTTGACATGGCAGTAGTGCAATCCTTTTAACAACTGCTCCATATAATACTTGACTTGGG ATGGGGTACTGTGGTGCAAGACTTTCTTCAAATCATGATCCATGTATTCAAAAACCATATAGAT ATCTCCCCTATACATGTAATCATCTGATCCTCCTGCTCCATGTGCTGTACCAGGAGATACTACA ATTTCTTTCAATCTGATGATGTTCTCGTGATCCAGCTTTTTTAATAGTTTAATCTCACGCAAGA TTTGGCGTGGAAACCCTTCTTTGCCATCATCCAGTTTGATTTTCTTAAGTGCTGCTCTTTCTCC AGTTATAATATCCATAGCCTCGAATACTTCA
Genomic sequence	CTCAGTTCTGCCAGGAAATAATGGTTTCCTCAATAAAAATTCTGCAAATATGCAACCAACAGAC CATATATCCACTGCTTCAGCATAATTTGTGGCACCGAGGAGCAACTCTGGGGGTCTAAGAGCAG TTTGTAGAATGAAGGAAATTGATATCAGCAAAAGGAGATAGGAAAAAAATACAACACAAGTAAA CATGTTGGGGTTGGACAAGATGATATATAATAGCATAAGTCCTTAATTCTTTATTCGACTTACC GGTACCAGAGAGTAATAACATGATTTGTGAAACTTCCGTCTCTAGTGAATGGCCTTGCAAGGCC AAAATCAGCGAGCTTTAACAGCTTACCACCACCACTTATTAGAAGATTAGCCCCTATAAATGGT AACAAGTAATCTGAGGGTCGAATAAAAATGATCATAGATATAAAAGTTGAAGATACATTCAAAC AGAACAAACCTTTGATATCACGATGAAGTACATTGTTGACATGGCAGTAGTGCAATCCTTTTAA CAACTGCTCCATATAATACTACAGAAATGAAAATAGACAACAATGAATAGGCTGTTCTTAAGGA GTACAATCAACTTGTATCCTGCTTGGTGAAGCACTGAAGCTTAATTTGTTTACAACAGCTTGCA TAAAACTATACAAGAGAAACTGAGCGAGAGAAGAATCTTTTGTTTTGGTAAGCTTACCGTTCAA TGTTAATTGTTACAGCAAGTTAAATCATATTTCTGCAGCAAGTATGTATTAGTGGAAATTTTAT TCTGTTGGAACCTGCAGGTACCACGCTAACCATGTGAATTGTTGCATGCAATATTTTATCCTAT CCGATAGGCATCAAGGCACAAGACAACATCCCTACCACTATCCCAACCTCCCTCGTCCTTGATA CCATCACAAATACTTATTTGTCCTTCACATACTCCTTGCTGCAACCCTCAGCCCTCCTTGGTCA CTGTTGCCAGACCTGGTTTCCCAATTCCCATAAATGTCACCATGGTCCACAAACCACAGATGGC CTCTCACTCTATCCATCCCTGGCATGCAGCAGTAGTGTGGAAACACTTGAAACCAGGCCAAGTT AGTTGTTTGAGGCTACTGATGAAGGAGGTGACAGGATCCATGTCCAGGAAAAATAAAAGCAGGT ATTGATCCACCCCCCCTATGGTGAATTCTTGGAGAACTTGAACCAATTTTGGAAGTTTTGTGAT TTACTAGTTTAAATCTCTCAATTCTCAGGATGAAAGCAGAAAATTCCTAATCCAAGACAATAGC TCCTTTAATCTTTAGCTCAAAATTCCATAGTCCACTTTGAAAGTACGAGAAGAAAGGGGGCATC TCTCTAAAACACAGGGGCGGAGCTAGAGTCATTAGGAGGGGTTCCCAGGAACCCGGTGAAAAAA AATTTGTAACTAAACCTTACCTATTTTCACCATGTGTGCACCCCCCTCAATATAAATTTAGGCA CCCATATCAACTTAAACTCGATATAAAGTGAGTAAATTAAACAAGTGGCACCCCCCCTCCATTT CGTTCTAGCTCCGCCCCTGCTTAAAACACATGGGATAGAAGAACTACATATACCAGAGTACCTT GACTTGGGATGGGGTACTGTGGTGCAAGACTTTCTTCAAATCATGATCCATGTATTCAAAAACC ATATAGATATCTCCCCTATACATGTAATCATCTGCAGAATTTTAGCATAGGTTATGAATGATTT CTGTGCATTGATCAATATGAAGAAAAAATTGAGCAGAATGAAAAATTATTAAACAAAACAAATA AAATATATCAGCATTAGCACATCAATGGAGAATGCAAGAAACAAAGAATAAAGTAACTGACCTG ATCCTCCTGCTCCATGTGCTGTACCTGAAAAATATTTACACATGGTGGGAATATGCAGTTTTCT GTACTCTTAGACATCTTGAAATTGCTAGAAGAAATTTGTTACCAGGAGATACTACAATTTCTTT CAATCTGATGATGTTCTCGTGATCCAGCTTTTTTAATAGTTTAATCTCACGCAAGATTTGGCGT GGAAACTACAAAAGTATGGATCAGATCAGAGAAGTGCAATGTTCTTCAATGAACACGGTTGCTC ATTAGAAAGAGTAGCCATAGCTTTGTGGATATCATAAAGCTTACCCCTTCTTTGCCATCATCCA GTTTGATTTTCTTAAGTGCTGCTCTTTCTCCAGTTATAATATCCATAGCCTCGAATACTTCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007781* 						
					
						PMCS
						0.321390665

Conservation Information
Conserved circRNAs	osi_circ_007781*
PMCS	0.321390665

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0453800_circ_g.3

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