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circRNA ID
AT1G01540_circ_g.1
Alias
ath_circ_000076
Organism
Arabidpsis thaliana
Position
chr1: 197501-197904  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
CIRCexplorer
Parent gene
Parent gene annotation
Probable serine/threonine-protein kinase At1g01540
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
AATGTTAAACGAGAAGAGTGATATCTATAGCTTCGGAATACTAATCATGGAGATAATCACTGGA
AGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGattggcgtatctacacgagggtcttgag
ccaaaagttgttcatcgggatattaaatcaagcaatatcttacttgatcgccaatggaatgcta
aggtttcg
Support reads
2
Tissues
seedlings
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ATTGGCGTATCTACACGAGGGTCTTGAGCCAAAAGTTGTTCATCGGGATATTAAATCAAGCAAT
ATCTTACTTGATCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGT
CTGAGAGCAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGGTAAACTATTAAACTCATTAA
CTCTCTCCTGCAATCTGCAAGGCAGTCTTTAGGAATGTGAATATTAGGAAATAACTTTTACTTT
GTGGGTTGATTTGTTTAGTTATGTAGCACCAGAATACGCTTGCACCGGAATGTTAAACGAGAAG
AGTGATATCTATAGCTTCGGAATACTAATCATGGAGATAATCACTGGAAGAAACCCGGTTGATT
ATAGTCGGCCTCAAGGAGAG
Number of exons covered
AT1G01540.2:2
AT1G01540.1:2
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Pan et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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