Detail information of BGIOSGA025213_circ_g.3


General Information
CircRNA Name BGIOSGA025213_circ_g.3
ID in PlantcircBase osi_circ_007042
Alias 7:3496833|3500443
Organism Oryza sativa ssp. indica
Position chr7: 3496833-3500443  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA025213
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA025213_circ_g.2 BGIOSGA025213_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA025213-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATGCGGATTGGCCAGTACAAGGATGGAGAGTTCCCTAAAGATAGCAGAGAGCTCGCAAAACG
TTTATTTTACACTGTTTACATGGGGACTGAAAATAGatcattggcttctgaaacctgtgaagag
ctcttcactgcaaatgcccctcgcattgacctagcgttgaatggtgttgaggtttttgtgaatg
caagtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCATTGGCTTCTGAAACCTGTGAAGAGCTCTTCACTGCAAATGCCCCTCGCATTGACCTAGCG
TTGAATGGTGTTGAGGTTTTTGTGAATGCAAGTGGAAGCCATCATCAGTTAAGGAAGCTCAGTC
TTAGGATTGATTCGATGAGAAATGCAACCCTTGCATGTGGTGGTGTTTACATGTATGCTAATCA
ACAGGGTTGTGATGGTGGACGCCTTTATTATGGTATATCAAAATGCCATTTTTTTGTGCTGTAA
AAATTGTTTTAGCGTTATCTGATCTATGATATGCTTTTTTTTTTCTTGTTTAGACTAAATGCTG
CGTAGTGCATGTGGTCTTGTTTCTAGTTCCAGTTGGACATGCAGGTCTCTTTGTTATCGATTGG
GTTAGAATAAGAGTAAAGATCAGGGGATATGATGCTTACCCTCTTTAGAAATTCATCATTGCTT
GATTGATAATTGGGGTACATCGGATCCTTCTATATATCAGGAGGACTGACTTGACACCTATAGG
ATCTCAATCCCTATTAACAATTCTCACTTCTTTCCTAACTAGATGATCTCCCGTCTTAAGTGGC
TTATTTCTAACCCAATCTGCCGCATGGGCTGCCCTGCATCCATAACTACTCTTGTTATTATTTT
CATGTGTCAGAAAGTGTCCATTGTCACCTATTGTAAGATAGCATGGATTTTTTTTCTGTTGACC
TAAACACCTTCTTCCTCTGCTCATTTGTTGGAGGCGGCTAGTGCATGAAAACTGTGGGAGGAGG
ATGCACTTTCTAGTAGTAGATGCTAGTTTACTTGTCTTTCAGCATTTGAACCCCAGAGGGACAG
CACTAAATTGGTGATTGTAGTTGATTTTCTGTATGGACCGTACTTCGAATAGTATATATTGGAA
CTGGAATGTTTAAAGTTCTACATTGAATTATCCTAAAACTGTCTACCCAAGATACAATACTTCT
GTTTAACATTTTGTCTTCTAAAGTTTCTGAATGCCATCTATCCTTCAAACCTTTAAGGAGTCAA
CAATAGTGCTATTTTTTTACATTAATGTTTTCGTTGCCTTCATCTGAGAGGTCTAAAGGTTAAT
TCATTTCTTCAAAGTTATTTTAATGGTTCCTGCTAGATGGTTGCTGCTGCATCGCTGTCAATGG
AGACGTTGTTGCACAGGGATCTCAATTCTCGTTAAAAGACGTTGAAGTATTGGATGCTCTGGTA
GATCTTGATGCAGTAAGTTCGAGCTCATTGAGATACTATTATTGCCGTTACTATTTCCTGTATA
TTATGAGTTTTTAAATATACAAAATGGAGGGTTATCTGTTATAACTTATGAACATGTGAAGGAA
TAGCTCCCTTCGTAACATGCGTCTTTCCAATGAGCTATGCTCACACAAACAAACAAACAATTTC
TCGGTTTTTTGTTTCCTTTTCTTGCCTCAGTGTGGAAAGAATACTATTAGTCCCTCCATTGATT
TTTCTTAGGCATATCAAAATCTGTAGATTTGGACCAATAATTGTTAAATTACTAGTACTTTAAG
TGTATAAATATCGTATTCGAAGTGAAAATATTGGTTTCATAGATATTAAGAATACATTTAGTGA
GAAATCAATGATCAAAATTTAATCTAAAGGCGTTTTGAATTCAAAATACGTCTTGTAAAAATCA
ACCCGGGGCAGTATTGAATTATTATAAGTGAGTTTTATTCAGTGATAGCTGCATTCTTTGCTTC
ATCTAATGTTAACAAATTCTTCTTGTCCTTCCACCGTTTTGATGACTACTTGCAGTTCTCTGAA
GTCATAAATCTGTGTTCTGCTATTCTCTATGAGTTTAAAATTACTGGTTCTTACAATGCTGATT
CAGCTTTGAGTCTTTGATGTAAGTTCATGGGTTGTATTCTTGCATAAACTGAGTATTTATTTTG
TACCATCAGGTATCAAGTTATCGAGCATCTGTTTCTAGTTTTAGAGAGCAAGCAAGTCACCGAA
CCAAAGTACCTTTTGTTAAGGTACCATATAAGCTTTGTAAGCCATTTCAGAGTGGAATGGTTCC
AACTGGTCCTGTTGAGGTCAGTTCCTGTTTATATATCTATTTTGATTCTATCTTGACATGATTT
CTTAAATATAAGAGATTTAAGATGTCCTCAAGCATCAATTATTGGGAATAACAATATTAAGCAT
CATATAATTGTTTAGCATATTATGCAATTTGAAAACTAGTTCCATGTGGGTTCAGCTAATTCAT
TTTCATAAACTATCGTGCAACATATGTATTGTCTAATATATTGCTATTTATTAAATTTCCTTTA
TTTCATGGCTGATTTTAACAGACTTCCTGTCAAATTTCTCCCTCCATTCTTTTTTAGACGTAGT
TTTATGGGCTTTGTTCTCTGCTAGATGCCGCTTTAGGTATTCTAGGTTGGTGCTGGGAGAGGTG
CCATTTACTGTGGAGTTAATTTTGTGTACATGGACTATAGTTTTAGACTGCAAAATAAGCAATA
TTTAGGATGTAAGAACTCAGCATAGTGCACTGGTCTTGGTAATTGGTGCAGAAGGCTAAAATGA
ATGGATTATATGAATTTGACTAATTGAGATGTACCACTAGACCCATTTAGACCCTGCCACAGAT
TAGTTATTTAGATTGTTAGTGTAGTGAGAGTTCCTCTTTTTCTTTTCTGATCTTCTTGCGGTTG
TCTCTGAAAGTAGGCCTGCAAATACAATTGCTATTATAATATCACTGAACTTGAAGTTACTTAA
ATACAGTTTTTTTCTATCCTGAGCAAATTATCACATGAATCCCTGCTGTGTCATTGTTAATGCA
CTCAAAATACTCCATTTGTCTTTTTATAGTATTTACAGCCTCAAAGTGTAGAGGATAGGTGGTG
ACCACTGTGCAGATGAAAAGGTTGTATGACATCTTTCTGCCGCATCTATCTTTGGTAGGTTATG
TATCATCGTCCTGAAGAGGAGATTGCATTTGGACCTAGTTGTTGGTTATGGGATTATCTGCGGA
GAAGTCGAGCATCAGGATTTTTGCTGCCACTGTCTGGTGGTGCGGATAGTTCATCTGTTGCAGC
AATAGTTGGTTGCATGTGCCAGCTTGTCGTAAAAGGTCAGTCCAAATTGTCTTTCTTCCTCTTT
CTTTTTAGCAAAAGATTTTGATGAAATGCCTTCAAAACGTAGTCAAATCATGTTGACTAGCATA
ATAAGAACAGAATAGTAAAATGGGGCAGAGAACTACTGGATGGATGAGATAAGTGATGCTGTAA
ATTTAGTGCCAAAGTGTGAGTGGGCCATTCATGTAACAAGAAGCTTTATCCTTTCTGTACTGTT
GCCCATTTACCATTAGATCATTTTTGCCAGTTGATCAGTTATGGTTGTACGCTTTTCTTTTTTG
TGAAATTGTTTCTGTAACATCAGAATTTATAACTGACGTGCCTGTTTCGAAATTGATGACTATT
CAGTCCCCATAATATGCAGATATAGAGAATGGAGATGAGCAAGTTAAGGCAGATGCTATGCGGA
TTGGCCAGTACAAGGATGGAGAGTTCCCTAAAGATAGCAGAGAGCTCGCAAAACGTTTATTTTA
CACTGTTTACATGGGGACTGAAAATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 3496888-3500425(-)
3496839-3500382(-)
3496976-3500440(+)
3500318-3496891(+)
Potential amino acid sequence MRGAFAVKSSSQVSEANDLFSVPM*(-)
MIYFQSPCKQCKINVLRALCYL*(-)
MRNATLACGGVYMYANQQGCDGGRLYYDGCCCIAVNGDVVAQGSQFSLKDVEVLDALVDLDAVS
SYRASVSSFREQASHRTKVPFVKVPYKLCKPFQSGMVPTGPVEVMYHRPEEEIAFGPSCWLWDY
LRRSRASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIENGDEQVKADAMRIGQYKDGEFPKDSR
ELAKRLFYTVYMGTENRSLASETCEELFTANAPRIDLALNGVEVFVNASGSHHQLRKLSLRIDS
MRNATLACGGVYMYANQQGCDGGRLYYDGCCCIAVNGDVVAQGSQFSLKDVEVLDALVDLDAVS
SYRASVSSFREQASHRTKVPFVKVPYKLCKPFQSGMVPTGPVEVMYHRPEEEIAFGPSCWLWDY
LRRSRASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIENGDEQVKADAMRIGQYKDGEFPKDSR
ELAKRLFYTVYMGTENRSLASETCEELFTANAPRIDLALNGVEVFVNASGSHHQLRKLSLRIDS
MRNATLACGGVYMYANQQGCDGGRLYYDGCCCIAVNGDVVAQGSQFSLKDVEVLDALVDLDAVS
SYRASVSSFREQASHRTKVPFVKVPYKLCKPFQSGMVPTGPVEVMYHRPEEEIAFGPSCWLWDY
LRRSRASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIENGDEQVKADAMRIGQYKDGEFPKDSR
ELAKRLFYTVYMGTENRSLASETCEELFTANAPRIDLALNGVEVFVNASGSHHQLRKLSLRIDS
MRNATLACGGVYMYANQQGCDGGRLYYDGCCCIAVNGDVVAQGSQFSLKDVEVLDALVDLDAVS
SYRASVSSFREQASHRTKVPFVKVPYKLCKPFQSGMVPTGPVEVMYHRPEEEIAFGPSCWLWDY
LRRSRASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIENGDEQVKADAMRIGQYKDGEFPKDSR
ELAKRLFYTVYMGTEN(+)
MEMSKLRQMLCGLASTRMESSLKIAESSQNVYFTLFTWGLKIDHWLLKPVKSSSLQMPLALT*(
+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021