Detail information of Zm00001d015385_circ_g.4


General Information
CircRNA Name Zm00001d015385_circ_g.4
ID in PlantcircBase zma_circ_004964
Alias stemctrl_test_circ_000763
Organism Zea mays
Position chr5: 87655681-87655851  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d015385
Parent gene annotation Chlorophyll a-b binding protein 6 chloroplastic
Parent gene strand +
Alternative splicing Zm00001d015385_circ_g.1 Zm00001d015385_circ_g.2 Zm00001d015385_circ_g.3 Zm00001d015385_circ_g.5
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered Zm00001d015385_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGCTGGTTGCTGTTTCCTGTGTACGACTAGGCCCTGCCTGTACAACGAGCGACGACGGTGAC
TTCCCGCCCGGAAATTAAACCcctcgcctcccacctcgccgacccgtggcacaacaacatcggc
gacatcatcatccccagatcaatctccccttgagctcagctca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGCCTCCCACCTCGCCGACCCGTGGCACAACAACATCGGCGACATCATCATCCCCAGATCA
ATCTCCCCTTGAGCTCAGCTCAGCTGCTGGTTGCTGTTTCCTGTGTACGACTAGGCCCTGCCTG
TACAACGAGCGACGACGGTGACTTCCCGCCCGGAAATTAAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.511080994
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018