Detail information of BGIOSGA014418_circ_g.2


General Information
CircRNA Name BGIOSGA014418_circ_g.2
ID in PlantcircBase osi_circ_014738
Alias Chr04:31027827_31029515(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29182505-29184193  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014418
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014418-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTAAGGCAGATTGACGGCACCAAAACCAGAAAGAACAGCCATGACACTTACTCCAATCACGC
CAATCCTACTAACCAACTGGGGCATCGTGAAAAACCccttgagcatcttataaacacaatacac
tgacaaagcatatcctagtagattctgagcatggcctctccaagttcgagaaaacgcagcagct
atctggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAGCATCTTATAAACACAATACACTGACAAAGCATATCCTAGTAGATTCTGAGCATGGCC
TCTCCAAGTTCGAGAAAACGCAGCAGCTATCTGGAAAAATGAAAAGAACGGTGTAGAAAAGTTT
AGCTCATATATTCAAAGAAGCATCGAGAAATTGTGCATATAGAAAACTCTAAAGAAAGAAAAAA
AGGAGACCCATTACTGCAGTAAAATGATGTACAGGATATAAGAGTCTGCATAATTAAAATGTAT
GTAACCAAAAAGAAATGCAATCTTATTGAATGATTCTCCCAGAAATTATAAGTTCTCAGATATA
TGTCAGTGCCTTAATGCGAAAATGAAATGAAAACATCAGCCAATACATCAGAAATCACCATAAT
GGAAGGAAGTTATGCTAATCTATAGGGAGAAATATTCACAATATTCAATTGTAAGGTACAATAA
CCAATGAACTTTAGCAAGTGGTGTAACATTTATGCGGCTGATCCGATTTGTTGGGATAGAGTAA
CAGTTCTCTTACTATCTAACCAAATCAATGTTAAGTAGCCAACACCACAATAAAGCAATGATGG
CAACCCCATCACAATCATAGAACTAAACAGCACAAGGTTAAGAAAGTAGAGGGGTATGTCCTGC
CAATCGTTTTCGTTTTCAATCTTAACATTGTGATGAAAGGTGCAAAAAGTATACCTTTGCTTGA
CGGAGTTCATATATCTCAAGAAATAGTTGTTTGGAAAGTTCTTCTAGTGCCTGGACCTCTGCAT
CCAAGCTTTTGATATCTTCCAAGAAACAAATAGGGCTTCATGCATATGACTGACAAGTGAAATG
GTGTACCAAACAAAAACAGAAAGAAAATAAATACAACATACCCTGCTCAGTTTGATCTTCTTGC
ACAGATCGAACAACTGTCCCAACGATACGCTTTAGAAATGATCTGGCTTTTAGCTTCTGCAAGT
ATTAAATTTTGTATTCAGTCAAGCCACAAAGGGTAAACATCAACATAATAATAGACCATTCTAC
TTCCAAGATGACATTTTGTTGAGTTAATGTGATAGTATATTTTGCATTGCTTATTGATAGAACA
GATCCCTATCCCATCAATCTCGCCACATGCAGACAATTCTGCATAGTACAATCATATGCATTTA
GTACTTCTTATTAATTGAACAGTGTCTTATCTATTCAATCCTACTAGATGCAAGTACAGGCAAC
AAAATATGACTGCATAGCTAAATATCTGTACATTTTGCAATGAGAGCAAACTTCCATGCTTGCA
ATCCAACAGTTATTTTAATTCACATCCATTTGAATAGTAAGCACACCTCTTCTGATCCTTGAAT
CCTCTCCATCTCCATTTTGGACAGAACAATTTTCTTTTTCTTAGCGATGCATGTCTCCATGGAT
TGCATGAGCTGCCTTTCCAATGTTTTGATGTCCATTTCATCAATTTCCCTGTAAGCCAGGATTG
GCACGCATAGCATAGAATTAAACTGAAATCAAAGCACACTGTGTGGAAATACAACTTTTGAGAG
AGATCAGCTTATAGGTATATCAAAGTTCAAACCTGATAAACAGTGACAGATAGCTGTAAGGCAG
ATTGACGGCACCAAAACCAGAAAGAACAGCCATGACACTTACTCCAATCACGCCAATCCTACTA
ACCAACTGGGGCATCGTGAAAAACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021