Detail information of Zm00001d032739_circ_g.2


General Information
CircRNA Name Zm00001d032739_circ_g.2
ID in PlantcircBase zma_circ_003634
Alias Rctrl_test_circ_002328
Organism Zea mays
Position chr1: 236936922-236937033  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d032739
Parent gene annotation Heterogeneous nuclear ribonucleoprotein 1
Parent gene strand -
Alternative splicing Zm00001d032739_circ_g.1
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d032739_T008:1
Zm00001d032739_T006:1
Zm00001d032739_T007:1
Zm00001d032739_T009:1
Zm00001d032739_T002:1
Zm00001d032739_T010:1
Zm00001d032739_T001:1
Zm00001d032739_T005:1
Zm00001d032739_T004:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCACTTCGCGCTCCATAAGCTCCATATCCCCCATGACTACCATACGATGGATCACcttccata
ccctgcaccatatccagatgctccaccagtagcaggattgccagcacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCATACCCTGCACCATATCCAGATGCTCCACCAGTAGCAGGATTGCCAGCACCATCACTTC
GCGCTCCATAAGCTCCATATCCCCCATGACTACCATACGATGGATCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.454643601
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018