Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024953_circ_g.2 |
ID in PlantcircBase | zma_circ_010259 |
Alias | zma_circ_0000208 |
Organism | Zea mays |
Position | chr10: 96636063-96641875 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024953 |
Parent gene annotation |
Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d024953_T008:4 Zm00001d024953_T026:5 Zm00001d024953_T022:5 Zm00001d024953_T025:5 Zm00001d024953_T027:5 Zm00001d024953_T004:5 Zm00001d024953_T015:5 Zm00001d024953_T029:5 Zm00001d024953_T006:5 Zm00001d024953_T030:2 Zm00001d024953_T020:5 Zm00001d024953_T024:5 Zm00001d024953_T028:5 Zm00001d024953_T010:5 Zm00001d024953_T002:5 Zm00001d024953_T017:5 Zm00001d024953_T012:5 Zm00001d024953_T018:5 Zm00001d024953_T011:5 Zm00001d024953_T013:5 Zm00001d024953_T021:5 Zm00001d024953_T003:5 Zm00001d024953_T001:5 Zm00001d024953_T032:2 Zm00001d024953_T031:2 Zm00001d024953_T033:2 Zm00001d024953_T009:5 Zm00001d024953_T007:5 Zm00001d024953_T019:5 Zm00001d024953_T005:5 Zm00001d024953_T023:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.107062743 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
96641808-96636071(+) 96641847-96636065(-) |
Potential amino acid sequence |
MLKSKLLSSSCIHELHIISHMFSLMK*(+) MDARRAEKFRFQHMDTGAEEFQKMLLTCGASLSCATKEWVSNHYKWIVWKLASLERCYPTRVAG KFLTVDNVLEELKYRYDREVNHGHRSAIKKILEGNSSPSLMMVLCISAIYSCPYQNNNKLEVNK VDTNEDNSGNQSFSATNRNMSANIELTDGWYSLDASLDVALLEQLEKRKLFVGQKLRIWGASLC GWSGPVSFHETEHVTDDVKLMDARRAEKFRFQHMDTGAEEFQKMLLTCGASLSCATKEWVSNHY KWIVWKLASLERCYPTRVAGKFLTVDNVLEELKYRYDREVNHGHRSAIKKILEGNSSPSLMMVL CISAIYSCPYQNNNKLEVNKVDTNEDNSGNQSFSATNRNMSANIELTDGWYSLDASLDVALLEQ LEKRKLFVGQKLRIWGASLCGWSGPVSFHETEHVTDDVKLMDARRAEKFRFQHMDTGAEEFQKM LLTCGASLSCATKEWVSNHYKWIVWKLASLERCYPTRVAGKFLTVDNVLEELKYRYDREVNHGH RSAIKKILEGNSSPSLMMVLCISAIYSCPYQNNNKLEVNKVDTNEDNSGNQSFSATNRNMSANI ELTDGWYSLDASLDVALLEQLEKRKLFVGQKLRIWGASLCGWSGPVSFHETEHVTDDVKLMDAR RAEKFRFQHMDTGAEEFQKMLLTCGASLSCATKEWVSNHYKWIVWKLASLERCYPTRVAGKFLT VDNVLEELKYRYDREVNHGHRSAIKKILEGNSSPSLMMVLCISAIYSCPYQNNNKLEVNKVDTN EDNSGNQSFSATNRNMSANIELTDGWYSLDASLDVALLEQLEKRKLFVGQKLRIWGASLCGWSG PVSFHE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |