Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05890_circ_g.5 |
ID in PlantcircBase | ath_circ_000894 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 1780174-1782868 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT1G05890 |
Parent gene annotation |
RING/U-box superfamily protein |
Parent gene strand | + |
Alternative splicing | AT1G05890_circ_g.2 AT1G05890_circ_g.3 AT1G05890_circ_g.4 AT1G05890_circ_g.6 AT1G05890_circ_g.7 AT1G05890_circ_g.8 AT1G05890_circ_g.9 AT1G05890_circ_g.10 AT1G05890_circ_g.11 AT1G05890_circ_g.12 AT1G05890_circ_g.13 AT1G05890_circ_g.14 |
Support reads | 2 |
Tissues | leaf, aerial |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G05890.1:10 AT1G05890.2:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.237967208 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1781128-1782865(+) |
Potential amino acid sequence |
MLKCPDPSCPAAIGRDMIDKLASKEDKEKYYRYFLRSYVEVNREMKWCPAPGCEHAIDFAGGTE SYDVSCLCSHSFCWNCTEEAHRPVDCDTVGKWILKNSAESENMNWILANSKPCPKCKRPIEKNH GCMHMTCTPPCKFEFCWLCLNAWTEHGERTGGFYACNRYEAAKQEGLYDEAERRREMAKNSLER YTHYYERWASNQVSRQKAMGDLQKMQSEKSNYVVLKEEDIRRHQNDDVGRVSAVLSITDVEAST LLLHYHWSVSKVNDEWFADEERVRRTVGILEGPVVTTPDGREFTCGICFDSYTLEEIVSVSCGH PFCATCWTGYISTTINDGPGCLMLKCPDPSCPAAIGRDMIDKLASKEDKEKYYRYFLRSYVEVN REMKWCPAPGCEHAIDFAGGTESYDVSCLCSHSFCWNCTEEAHRPVDCDTVGKWILKNSAESEN MNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLNAWTEHGERTGGFYACNRYEAA KQEGLYDEAERRREMAKNSLERYTHYYERWASNQVSRQKAMGDLQKMQSEKSNYVVLKEEDIRR HQNDDVGRVSAVLSITDVEASTLLLHYHWSVSKVNDEWFADEERVRRTVGILEGPVVTTPDGRE FTCGICFDSYTLEEIVSVSCGHPFCATCWTGYISTTINDGPGCLMLKCPDPSCPAAIGRDMIDK LASKEDKEKYYRYFLRSYVEVNREMKWCPAPGCEHAIDFAGGTESYDVSCLCSHSFCWNCTEEA HRPVDCDTVGKWILKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCL NAWTEHGERTGGFYACNRYEAAKQEGLYDEAERRREMAKNSLERYTHYYERWASNQVSRQKAMG DLQKMQSEKSNYVVLKEEDIRRHQNDDVGRVSAVLSITDVEASTLLLHYHWSVSKVNDEWFADE ERVRRTVGILEGPVVTTPDGREFTCGICFDSYTLEEIVSVSCGHPFCATCWTGYISTTINDGPG CLMLKCPDPSCPAAIGRDMIDKLASKEDKEKYYRYFLRSYVEVNREMKWCPAPGCEHAIDFAGG TESYDVSCLCSHSFCWNCTEEAHRPVDCDTVGKWILKNSAESENMNWILANSKPCPKCKRPIEK NHGCMHMTCTPPCKFEFCWLCLNAWTEHGERTGGFYACNRYEAAKQEGLYDEAERRREMAKNSL ERYTHYYERWASNQVSRQKAMGDLQKMQSEK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |