Detail information of Os03g0120200_circ_g.1


General Information
CircRNA Name Os03g0120200_circ_g.1
ID in PlantcircBase osa_circ_017634
Alias NA
Organism Oryza sativa
Position chr3: 1109614-1109906  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0120200
Parent gene annotation Remorin, C-terminal region domain containing protein. (Os03t0120
200-01);Similar to Remorin, C-terminal region family protein, ex
pressed. (Os03t0120200-02);Remorin, C-terminal region domain con
taining protein. (Os03t0120200-03)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCCAGTGATAAAAACTAGGAAACTGCATATATTGGCCTGGTTGAAGAGTATACATGGTATC
ATCATCAAAATAATCAAAGGGAGATCGATGGTCTACagaaattgaaattgcctgaagcttcttg
ggtttctgttcaattctgtgtcttggacttggatagatgtgtcatgagataaactcataaacag
tcccattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAATTGAAATTGCCTGAAGCTTCTTGGGTTTCTGTTCAATTCTGTGTCTTGGACTTGGATAG
ATGTGTCATGAGATAAACTCATAAACAGTCCCATTCCAATGCAGAATAAGACACTTTTGGTGCT
AATGATGTACTCCTAGCCCTTTTGCAGAGAAAGTTTAATGATTTTGACAAGTTACTGAAGCTAT
TTTATCCAGTGATAAAAACTAGGAAACTGCATATATTGGCCTGGTTGAAGAGTATACATGGTAT
CATCATCAAAATAATCAAAGGGAGATCGATGGTCTAC
Conservation Information
Conserved circRNAs osi_circ_012951
PMCS 0.130546075
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2873b
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017