Detail information of AT3G07660_circ_g.3


General Information
CircRNA Name AT3G07660_circ_g.3
ID in PlantcircBase ath_circ_020334
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2447128-2447619  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT3G07660
Parent gene annotation Flocculation protein (DUF1296)
Parent gene strand -
Alternative splicing AT3G07660_circ_g.2 AT3G07660_circ_g.4
Support reads 4
Tissues seedlings
Exon boundary   No-No
Splicing signals   CT-GC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTCACAACTTCTTTCTAGCTCATTTCACTCTAAATTTAGAGTATTTATTCGCATAACAACA
TCAACAATAATTGACAAAGTAGAGAAAGGTAGATACttagggactggtcatataaatatagtta
tatttcaagacataaagttcaataactagaagtgaaaaaatttgggtttcgtgttcggataagt
gttcataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAGGGACTGGTCATATAAATATAGTTATATTTCAAGACATAAAGTTCAATAACTAGAAGTGAA
AAAATTTGGGTTTCGTGTTCGGATAAGTGTTCATAATGTAAAGGTTATCATGACTTCCAGAAAA
TCAGTGACTGCACAAAATGTTTTACTTTCTGTTTGGAACTTAAGAGCCAAGCAGGACAAAGAGT
TGTTTCTATGAACAAAACCCACTTAACTATTGACACTATCAGTTCAACTGACACCCTACACAGC
ATGACAAAAAGATATATATTTTGTTGACCTAGAACCTGATATACACCGTAGTGCTTTGGAAGTT
TCGGCTATGCTACTAAGCAAAACAAGCGACTACACTAGGAAATTTCTCTTACCTATTTCCATCA
GTAATCTATTATTCACAACTTCTTTCTAGCTCATTTCACTCTAAATTTAGAGTATTTATTCGCA
TAACAACATCAACAATAATTGACAAAGTAGAGAAAGGTAGATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.122126593
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017