Detail information of ENSRNA049476498_circ_ig.18


General Information
CircRNA Name ENSRNA049476498_circ_ig.18
ID in PlantcircBase osa_circ_038277
Alias NA
Organism Oryza sativa
Position chr9: 15470-15789  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000008552_circ_g.1 EPlOSAG00000008552_circ_ag.1 ENSRNA049476493_circ_ig.1 ENSRNA049476493_circ_ig.2 ENSRNA049476493_circ_ig.3 ENSRNA049476493_circ_ig.4 ENSRNA049476493_circ_ig.5 ENSRNA049476493_circ_ig.6 ENSRNA049476493_circ_ig.7 ENSRNA049476493_circ_ig.8 ENSRNA049476493_circ_ig.9 ENSRNA049476493_circ_ig.10 ENSRNA049476493_circ_ig.11 ENSRNA049476493_circ_ig.12 ENSRNA049476493_circ_ig.13 ENSRNA049476493_circ_ig.14 ENSRNA049476493_circ_ig.15 ENSRNA049476493_circ_ig.16 ENSRNA049476493_circ_ig.17 ENSRNA049476493_circ_ig.18 ENSRNA049476493_circ_ig.19 ENSRNA049476493_circ_ig.20 ENSRNA049476493_circ_ig.21 ENSRNA049476493_circ_ig.22 ENSRNA049476493_circ_ig.23 ENSRNA049476493_circ_ig.24 ENSRNA049476493_circ_ig.25 ENSRNA049476493_circ_ig.26 ENSRNA049476493_circ_ig.27 ENSRNA049476493_circ_ig.28 ENSRNA049476493_circ_ig.29 ENSRNA049476493_circ_ig.30 ENSRNA049476493_circ_ig.31 ENSRNA049476493_circ_ig.32 ENSRNA049476493_circ_ig.33 ENSRNA049476493_circ_ig.34 EPlOSAG00000023741_circ_ig.1 EPlOSAG00000023741_circ_ig.2 EPlOSAG00000023741_circ_ig.3 EPlOSAG00000023741_circ_ig.4 EPlOSAG00000023741_circ_ig.5 EPlOSAG00000023741_circ_ig.6 EPlOSAG00000023741_circ_ig.7 EPlOSAG00000023741_circ_ig.8 EPlOSAG00000023741_circ_ig.9 EPlOSAG00000023741_circ_ig.10 EPlOSAG00000023741_circ_ig.11 EPlOSAG00000023741_circ_ig.12 EPlOSAG00000023741_circ_ig.13 EPlOSAG00000023741_circ_ig.14 EPlOSAG00000023741_circ_ig.15 EPlOSAG00000023741_circ_ig.16 EPlOSAG00000023741_circ_ig.17 EPlOSAG00000023741_circ_ig.18 EPlOSAG00000023741_circ_ig.19 EPlOSAG00000023741_circ_ig.20 EPlOSAG00000019921_circ_g.1 EPlOSAG00000019921_circ_g.2 EPlOSAG00000008551_circ_ag.1 EPlOSAG00000019921_circ_g.2 EPlOSAG00000008551_circ_ag.3 ENSRNA049476498_circ_ig.1 ENSRNA049476498_circ_ig.2 ENSRNA049476498_circ_ig.3 ENSRNA049476498_circ_ig.4 ENSRNA049476498_circ_ig.5 ENSRNA049476498_circ_ig.6 ENSRNA049476498_circ_ig.7 ENSRNA049476498_circ_ig.8 ENSRNA049476498_circ_ig.9 ENSRNA049476498_circ_ig.10 ENSRNA049476498_circ_ig.11 ENSRNA049476498_circ_ig.12 ENSRNA049476498_circ_ig.13 ENSRNA049476498_circ_ig.14 ENSRNA049476498_circ_ig.15 ENSRNA049476498_circ_ig.16 ENSRNA049476498_circ_ig.17 ENSRNA049476498_circ_ig.19 ENSRNA049476498_circ_ig.20 ENSRNA049476498_circ_ig.21 ENSRNA049476498_circ_ig.22 ENSRNA049476498_circ_ig.23 EPlOSAG00000023740_circ_ig.1 EPlOSAG00000023740_circ_ig.2 EPlOSAG00000023740_circ_ig.3 EPlOSAG00000023740_circ_ig.4 EPlOSAG00000023740_circ_ig.5 EPlOSAG00000023740_circ_ig.6 EPlOSAG00000023740_circ_ig.7 EPlOSAG00000023740_circ_ig.8 EPlOSAG00000023740_circ_ig.9 EPlOSAG00000023740_circ_ig.10 EPlOSAG00000023740_circ_ig.11 EPlOSAG00000023740_circ_ig.12 EPlOSAG00000023740_circ_ig.13 EPlOSAG00000023740_circ_ig.14 EPlOSAG00000008519_circ_g.1 EPlOSAG00000008519_circ_g.2 EPlOSAG00000008550_circ_ag.1 ENSRNA049476502_circ_ig.1 ENSRNA049476502_circ_ig.2 ENSRNA049476502_circ_ig.3 ENSRNA049476502_circ_ig.4 ENSRNA049476502_circ_ig.5 ENSRNA049476502_circ_ig.6 ENSRNA049476502_circ_ig.7 ENSRNA049476502_circ_ig.8 ENSRNA049476502_circ_ig.9 ENSRNA049476502_circ_ig.10 ENSRNA049476502_circ_ig.11 ENSRNA049476502_circ_ig.12 ENSRNA049476502_circ_ig.13 ENSRNA049476502_circ_ig.14 ENSRNA049476502_circ_ig.15 ENSRNA049476502_circ_ig.16 ENSRNA049476502_circ_ig.17 ENSRNA049476502_circ_ig.18 ENSRNA049476502_circ_ig.19 EPlOSAG00000023739_circ_igg.1 EPlOSAG00000023739_circ_ig.1 EPlOSAG00000023739_circ_ig.2 EPlOSAG00000023739_circ_ig.3 EPlOSAG00000023739_circ_ig.4 EPlOSAG00000023739_circ_ig.5 EPlOSAG00000023739_circ_ig.6 EPlOSAG00000023739_circ_ig.7 EPlOSAG00000023739_circ_ig.8 EPlOSAG00000023739_circ_ig.9 EPlOSAG00000023739_circ_ig.10 EPlOSAG00000023739_circ_ig.11 EPlOSAG00000023739_circ_ig.12 EPlOSAG00000019899_circ_igg.1 EPlOSAG00000008518_circ_g.1 EPlOSAG00000008518_circ_g.2 EPlOSAG00000008518_circ_g.3 EPlOSAG00000008549_circ_ag.1 ENSRNA049476508_circ_ig.1 ENSRNA049476508_circ_ig.2 ENSRNA049476508_circ_ig.3 ENSRNA049476508_circ_ig.4 ENSRNA049476508_circ_ig.5 ENSRNA049476508_circ_ig.6 ENSRNA049476508_circ_ig.7 ENSRNA049476508_circ_ig.8 ENSRNA049476508_circ_ig.9 ENSRNA049476508_circ_ig.10 ENSRNA049476508_circ_ig.11 ENSRNA049476508_circ_ig.12 ENSRNA049476508_circ_ig.13 ENSRNA049476508_circ_ig.14 ENSRNA049476508_circ_ig.15 ENSRNA049476508_circ_ig.16 ENSRNA049476508_circ_ig.17 ENSRNA049476508_circ_ig.18 ENSRNA049476508_circ_ig.19 ENSRNA049476508_circ_ig.20 EPlOSAG00000023738_circ_ig.1 EPlOSAG00000023738_circ_ig.2 EPlOSAG00000023738_circ_ig.3 EPlOSAG00000023738_circ_ig.4 EPlOSAG00000023738_circ_ig.5 EPlOSAG00000023738_circ_ig.6 EPlOSAG00000023738_circ_ig.7 EPlOSAG00000023738_circ_ig.8 EPlOSAG00000023738_circ_ig.9 EPlOSAG00000023738_circ_ig.10 EPlOSAG00000023738_circ_ig.11 EPlOSAG00000023738_circ_ig.12 EPlOSAG00000023738_circ_ig.13 EPlOSAG00000023738_circ_ig.14 EPlOSAG00000023738_circ_ig.15 EPlOSAG00000023738_circ_ig.16 EPlOSAG00000023738_circ_ig.17 ENSRNA049476452_circ_g.1 ENSRNA049476452_circ_g.2 ENSRNA049476452_circ_g.3 ENSRNA049476452_circ_g.4
Support reads 13
Tissues root
Exon boundary   No-No
Splicing signals   TA-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCC
GGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCAatgggtaagccgatcctaagggacgggg
taaccccggcagagagcgcgaccacgcgcgtgccccgaaagggaatcgggttaagatttcccga
gccgggac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 320
Transcript exons: 15470-15789
ATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGCGCGTGCCCC
GAAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGT
CCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTG
GAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCG
GTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCA

Genomic sequence ATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGCGCGTGCCCC
GAAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGT
CCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTG
GAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCG
GTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCA
Conservation Information
Conserved circRNAs osi_circ_009614 osi_circ_009616 osi_circ_009617 osi_circ_009615
PMCS 1.374192697
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016