Detail information of Zm00001d031232_circ_g.1


General Information
CircRNA Name Zm00001d031232_circ_g.1
ID in PlantcircBase zma_circ_000730
Alias circ2595
Organism Zea mays
Position chr1: 182929032-182933223  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d031232
Parent gene annotation Sodium/hydrogen exchanger 7
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d031232_T081:5
Zm00001d031232_T009:5
Zm00001d031232_T092:5
Zm00001d031232_T041:5
Zm00001d031232_T085:5
Zm00001d031232_T053:5
Zm00001d031232_T003:5
Zm00001d031232_T029:5
Zm00001d031232_T022:5
Zm00001d031232_T057:5
Zm00001d031232_T065:5
Zm00001d031232_T032:5
Zm00001d031232_T077:5
Zm00001d031232_T002:5
Zm00001d031232_T054:5
Zm00001d031232_T005:5
Zm00001d031232_T084:5
Zm00001d031232_T078:5
Zm00001d031232_T025:5
Zm00001d031232_T068:5
Zm00001d031232_T086:5
Zm00001d031232_T051:5
Zm00001d031232_T095:5
Zm00001d031232_T037:5
Zm00001d031232_T088:5
Zm00001d031232_T074:5
Zm00001d031232_T024:5
Zm00001d031232_T036:5
Zm00001d031232_T067:5
Zm00001d031232_T021:5
Zm00001d031232_T056:5
Zm00001d031232_T019:5
Zm00001d031232_T093:5
Zm00001d031232_T061:5
Zm00001d031232_T075:5
Zm00001d031232_T016:5
Zm00001d031232_T048:5
Zm00001d031232_T049:5
Zm00001d031232_T097:5
Zm00001d031232_T015:5
Zm00001d031232_T070:5
Zm00001d031232_T055:5
Zm00001d031232_T082:5
Zm00001d031232_T062:5
Zm00001d031232_T004:5
Zm00001d031232_T027:5
Zm00001d031232_T069:5
Zm00001d031232_T020:5
Zm00001d031232_T040:5
Zm00001d031232_T013:5
Zm00001d031232_T045:5
Zm00001d031232_T058:5
Zm00001d031232_T030:5
Zm00001d031232_T011:5
Zm00001d031232_T090:5
Zm00001d031232_T007:5
Zm00001d031232_T047:5
Zm00001d031232_T043:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCCAAAGTGACGCAACATCGGGTACAAAACACCAACAACTATAACTCGAGATATTTGTACAA
AGACATAGAGCAGAAGAAGGAAGCCCCATGAACTGCccaagaaaatcatgtagctgccgccttg
cgattctgtgagcacgaagaaatgcagcacagatgtaacatccagactctaatctttcgactgt
gaagtatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAGAAAATCATGTAGCTGCCGCCTTGCGATTCTGTGAGCACGAAGAAATGCAGCACAGATGT
AACATCCAGACTCTAATCTTTCGACTGTGAAGTATGTGACAAGCTTTCGTGGTAACCTACTCCT
CTGAAGGAACCTATAGTAATTTGGGAACTGCACATTGGACTTTAAACCTTTCCAATCACATAAT
GTTTGTCCAGAAACAAGGTCCATAGCTTCATCAACCGATCTCATCAGAATATTTGCTGTAACTT
GAGTTATTCGTCCTTCTTCAAGCATTCCCCAGTACGCGGCTTGCACACCTGTTATAAAATTGTC
CTTATAAATTGTCTCCTTTAGCTAACATTCATAACAACACTTTGCACATTAAGTTGCAAAGGTA
TAGAAGATAGAACCATGGAGAAAACCGTAAGCAAACAGTTTATGGATAAACACATTGCAATAAG
GAGGTAAAACTGGAAAGACAAACGGACATCAGTCACAACCCCAGCATATCAAACTGCTAAAACA
CTTCTCAACAAAAGAAATCATTTGTTCCTTCGAAGAGGAGCGCCGCCTCTGGTGCTTTGCGGGT
GCCAAGAGCCTTAGCCAGCTTGGTTCGGCACAAAGAGGGGGTCAATAGTTGGATTAGAGTGGTC
AGGTCCTACCCCATTTTTATATTTTCAGGTTTTTTAAAAGTTCGTATTTGCAACCCTTTACTTG
GTCTGGGGTTTGGGGTGAAGTGTTGTACCAGACCCACTCTCTTTTCTCTCTTAATACGAAGATA
TGCAGCTCTCCTGCGTATTCGAGAAAAAAAGAAATCATAACAAAAGTAATTGAGGACAATCACT
AGCAAAGTAACCATTCATTTAGAAGACAGATAAATACCATCAAGCTACAAAGACCAAAGGGCCC
AAATTGAGCTACAAAGATGGTCACATGGGTAGGGAAAGTTTGTCTGCTTACTTGGGACACAAAA
TGGTTTAGGCTAATTGTCAGCAAGAACCAGTGAATATAACAATTTTTTTACTTGTGGTTCTCCC
AGATAACTATGGACAATCAATCTAGATGACTATTATCACATGTTACTCCCTTCGTCCTATGATA
AGTGCACTTCTAGAGTTCAAAATTTGTCTCAAAATAAATGCATCTCTAGGTATGAGACCACTCA
ACTCTAGCTGTTCTCTTCTATTTTCTCCCCTCTCAAAGTGCAATGATTACTGTAAAGTATATTT
GTTGTAACCATGGTCTATTTAGACCTTTTCCTCTTCTTAATATATTTTAAGGCGCAGTTCCCCT
GCGCTTTCGAGAAAAAAAAACTGTAAAGTATATTTGCTAGTTTATATATTATGTACCGTAGCCT
GCCATACGTGTTAGAGTATATTTGGTAGTTTAGATATTGTGCATCATAGATTGCCATATGTATC
CGTAGGTTGCCTTATCTACCAAGTCTTGCATTCTATATAATCCATTTAAGGGCTCAATGAAATA
AAACTATTCAATTACACCAATTCTATTCTCCTTATGGTACCACAAGTCTAGGTTTAGATCCTAA
CACTACCTGCTGTCAACTTCTGCAAGCCCCCCATCTCCATTGAGGGCAGCGCCACCATTTAGGT
GTCCGATTATATCGACCCGACTGCATCTTCATCGTCGTTGTCATGCAGAAGATTGGGATCTCCT
CATGCTCCCACATGAGTGGGTCTGAAGAAGGGATAAACCGAGGCAAGTATTGCCCGGCAAATGC
GGAGATACTGCCTGGACCCCGTGACCTAATGACTTAGTGAGACAGTTCTCACCACTGCACCAGG
TCTGCCCTTGTATAAAGTCTAAAAAGGATTTTAGAAAAAACCTTAATCACAAAAGAGAAAAAAA
TCTATGCCAATTGAATATGGTAATATATTATTTAATACTTTATGCAATATTTGTATCAAATCCG
TATAAAAATACGCGTATCAGATTTGTGTATTAAAAACTGTTAAACTGTGTGGCCAGAGCCACTT
CCAGGTTCAGGTACATGTGTGGCTGTTTAATAAAATATGCGTTCAGGTGTGTTCACGAAGAAAA
TATTTGTATCAAATTCCATCAGATAACTTGATAAGTGATAACGTACCATTCAAAAGCCGCACTC
GGATATCTGTTAAGTTCATGATATGCATGCAGTCATCTTCGTCACCAACATCATGGGGATGCTC
TGGCTCATAGTCTAGGTCATTCAAACATGTGATATATTTCTTTACAGTAACCCAGTCAGCAGGT
CCAAGTTCCTCGTCATCCCTTAGTTCACCAAAAGCCTCTAATGCTTTCTTTAGCATTTCGTACC
TTGTATATTTCAATATACGAAGCTGCAAAAAACCATATAAGAGTGCTTATGGAAGTAATAAATC
AGCAGAGTACACAAACCTAAACAAATAGAAGATGGTGAATAAGAGGTATGGTTAATGATAGTGA
TAAAGGCTTCCTGAACACAACTTGTGAAATTATTAATCCATTTTTCACAACAAGGTCTGATGCT
AATCTTGTTCAGATATAAATTACAGTTTACAGATTGAAAAATGTTTTGGTGGTGTTCTTCAGAG
CAACACGTCTGTTATAAATGTTTTCATCTAAAGAGGGCGGAAATCAATTGCTCTGGATTTCCAG
CTACTTCTGGCAGATTACTTGAGATAATATTTGGGGATCAGTTGTCAAAAGAAGTGCATACTCA
AACAGATGGTTCTCTCTGAATCACATGCAAGAACTGATAATATATCTTTTGTGATGAAAAATAC
ATCTCTTTAATGTGACTTCAGACCAGCGTCAAATTAAGAAAAAAGTCCTTTTCTTGCGCTCATA
CATATTGTCCCCATGGGGCTATTATACAACACAAGTTGCATTCATCTGGTAGTAGGGCATAAAT
TAGGTTTAGGGCTTCTTTTCATCTGCTGCTGTCACGTGCAAAGGATCATTTACAATCAATTCAA
AAGTAATTTTGCACTTGGCATGCTAGCATACATACTGTTTTGACCCGGAAAAAGTAAGGGAAAA
CCCCTACTGTGGTATATATTAATAGATATATAAAAAAGGAGATACACCGTACTGAAAAAACAAA
AGCTGCTGGCAAAAACTGATTTCAGAGAGTCTGCAGTCAGTTAGCAATCAAAGGTCTATGACAA
GCCTTGATCCTAAGAAGATGCAAACTGACAGAATGTTTGAAAGCTTCCAAAGCTCGGATTCTGG
TTTCTGAAGATGATTGGAGTTGTAATCAATTGAATGCCATAGAATTCTTGAATGTCAATCTTAT
TCCACACACTTACTGAAATAGTGAAAGCTCCGTTTTGCACCTTCCCTTTAAAAGCTTTGAAGAG
AAGAATGATTTTTAAATTAATGATGTTGCCCTATTGTTGTTCTTTTCAGAATTTCGATAGGTAC
TCAAAACATATTGATAAAGTAAATGTCTGCGACATAGCACAGGTATCAAAATTTTGTGAGATGG
GTATATTGATGACCATTAACCTTGAGATCTTGGAGGCACAAGGCTAAGTGGCAGGTAGGCAGCA
TATAAAACATTGCCTTCACTTGACCAGTAATAAGTTGAAGGGAGAGGACAGACGGGTACAAAAG
AATATATGGAGGTTCATAAAAACAAGCAACACCTTAAATGCTGAGCTGGAATTGATAAATGACA
AGTTATGAAACTAACCTTTGTGGGCAACAATTTGTCCATGCCGAGTATATGTAGCAAAAATTGT
GTGGTTGAGCCATTAAAAATCAATGTCAGAAACACAATGCCACCAGTGAAGAACACAAACTGCA
TAAGATGTAACATTAGCAAAGTCCATATTGAACATTTGACACTTCCACGCACAAAAAGGGCATA
CCATTGTTCCAACTTCTGGTTTAAGGTAAGGTTGAACTGAATCGCTGGTACGCTAGTAAAATTA
TCCCAACAAATGCATTAGAAAACTCTTCAGTAGACTAATGTACTTACATGAAAATGAAGCACGG
AGAAAAATATTTACCTTAACACAAATGAAACTAACTTACCTTAACAGATAATGATAGTGACAGA
GCAACAGCCCCTCGCAGCCCTGACCAAACAAGAATCATGGCCTCTTTCAAGTCCAACCCATACC
CAAAGTGACGCAACATCGGGTACAAAACACCAACAACTATAACTCGAGATATTTGTACAAAGAC
ATAGAGCAGAAGAAGGAAGCCCCATGAACTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.019701986
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b