Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0167800_circ_g.11 |
ID in PlantcircBase | osa_circ_008561 |
Alias | Os11circ01209/Os_ciR1005 |
Organism | Oryza sativa |
Position | chr11: 3278805-3279307 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | SMALT, Segemehl, circRNA_finder, find_circ |
Parent gene | Os11g0167800 |
Parent gene annotation |
Similar to Anth (Pollen-specific desiccation-associated LLA23 pr otein). (Os11t0167800-01) |
Parent gene strand | - |
Alternative splicing | Os11g0167800_circ_g.1 Os11g0167800_circ_g.2 Os11g0167800_circ_g.3 Os11g0167800_circ_g.4 Os11g0167800_circ_g.5 Os11g0167800_circ_g.6 Os11g0167800_circ_g.7 Os11g0167800_circ_g.8 Os11g0167800_circ_g.9 Os11g0167800_circ_g.10 Os11g0167800_circ_g.12 Os11g0167800_circ_g.13 Os11g0167800_circ_g.14 Os11g0167800_circ_g.15 Os11g0167800_circ_g.16 Os11g0167800_circ_g.17 Os11g0167800_circ_g.18 Os11g0167800_circ_g.19 Os11g0167800_circ_g.20 Os11g0167800_circ_g.21 Os11g0167800_circ_g.22 Os11g0167800_circ_g.23 Os11g0167800_circ_g.24 Os11g0167800_circ_g.25 Os11g0167800_circ_g.26 Os11g0167800_circ_g.27 |
Support reads | 81/28/8 |
Tissues | leaf and panicle/root/seed |
Exon boundary | No-No |
Splicing signals | GT-AG |
Number of exons covered | Os11t0167800-01:2 |
Conservation Information | |
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Conserved circRNAs | zma_circ_003951 zma_circ_005151 |
PMCS | 0.795284742 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |