Detail information of AAAA02042497.1_circ_ig.3


General Information
CircRNA Name AAAA02042497.1_circ_ig.3
ID in PlantcircBase osi_circ_019015
Alias Chr12:10278171_10278373(MH63RS2)
Organism Oryza sativa ssp. indica
Position chrAAAA02042497.1: 1501-1703  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTT
AATTCCTGTGGACGTCTACTTGCCGGGTTGCCCACCctaattttaacagccggtacagtaacaa
tgaaaatggctccctctttagtgagattatatgagcaaatgcctgaaccaaaatacgtcattgc
tatgggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAATTTTAACAGCCGGTACAGTAACAATGAAAATGGCTCCCTCTTTAGTGAGATTATATGAGC
AAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACTGGTGGAATGTTCAG
TACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTACTTGCCG
GGTTGCCCACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021