Detail information of BGIOSGA033438_circ_g.2


General Information
CircRNA Name BGIOSGA033438_circ_g.2
ID in PlantcircBase osi_circ_008702
Alias Chr10:23993190_23994784(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21133531-21135126  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033438
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033438-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGTTTGCAGTACCCGATGGAAGAGGCTGATTCAATCGCGAGGTCGTTCCTTCATATTTTCAA
CTGCTTTACCAGTGCCAGTAGTTGCTTCTGTGTATGggcagctgaagagtacggcatgggccct
agaggatctgcgttgatttgtggatatactacctatcacaaaatggtggaggaatcgttggcag
agctgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCAGCTGAAGAGTACGGCATGGGCCCTAGAGGATCTGCGTTGATTTGTGGATATACTACCTAT
CACAAAATGGTGGAGGAATCGTTGGCAGAGCTGAAGAAAAAGGAGGTACTGTTGTGTTCAAAAT
TTAAGCAACCACATGTGCCCGGTATACAAAATAAAATAAAAAACTTGCAGCCTTACTAGAGTCC
TTCTACAGGATTGCCTTCTTTGTCCCACTGGATTTTCTGCCAATATGTCTGTAATGACGGCTCT
GGGAAACATCAGCTCTCTGTTGGCTGCTGGGAGAAAACCTGCGGAGGACGAAAGAATAGCAATT
TTCTCAGATGCTCTGAACCATGCTTCGATCATTGATGGGATTCGCCTTGTTGAGCGACAGCAAG
AAGTGGTATCATTTGTGTACAAGCACTGTGACATGTCCCATCTTGAACTTTTGCTGTATGTTTT
TCACTTTCCAGTCATAACTCATAACATACAAAATGCTAAGCACTAATTTACTTAGTTATAAACC
ATGTTTGTGATTACACATGCAGATCCAGTTGCTCAATGGAAAAGAAAGTTGTTGTCACAGATAG
GCAAGTTATATATCCAAGTAAATTTCATCATTTAAGAAGCATTTATTCTTTGTATTAGTGAGTA
GTGTACCGAACTCAGAAGCTCTTTTGATTGGTAAAATGCAGCCTGTTCAGCATGGATGGTGATT
TTGTTCCATTGCCTGAGCTTGTCAAGTTGCGCAGAAAGTATGGGTTTTTGTTGGTGATCGACGA
TGTTAGTATATTATCTTCCCTGAAATACAGTATTTTTCTGGCCTAATATTAATCAAGTTATGTT
GCAAATTTCCTTTTCAAGGCACATGGAACACTTGTTTGTGGTGAGAATGGTGGTGGTGCACCTG
AGCTGTTTGAATGTGAGAATGAGATTGACATAAGTGTTGGCACCTTAAGCAAGGCTGCTGGCTG
CCAGGGTGGTTTTATAGCATGCAGGTATTCTATTATAAGGCATGTCCATATTATCTGGCAAGGA
AGAACTGCTCATAGTGCATATTAAACTGTGGAAATGAATCATAGATGCCTTGAAATAAAGGACT
TCATAAAATACCTGAGACAAAACCTACTTGATAATATGTAAACAGTAGCGACATGCTCATCACG
GCCAACAGGAAATGTTAGAACAAATGCTTGGATGACTTCAAACATTTTCCATATCTGTTGCTGT
CCTGAGTAACTTATGGGCATCGGCGATTATAGTTTAGGAATTACGCTAAGTGCTTAACTTTTGA
TGTTAATAGATGCTCTGGACACCACATAATATTATTTATCAGGGTCTTGGTTATGAAATTTGCA
CTTCAGAGCCTCATGCTTATAAACTCAATAAATAGAAGTTCTCTTGAATTAGCCTCTCTTGATA
ATACTTCATGCCATAATCTCTGCATTTTGGATGCATGCCATAATCTGTCTTTACAATTTCCAAT
CTTATGACGAATAATAATTTGAAATTTGTTTGCAGTACCCGATGGAAGAGGCTGATTCAATCGC
GAGGTCGTTCCTTCATATTTTCAACTGCTTTACCAGTGCCAGTAGTTGCTTCTGTGTATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021