Plant Circular RNA Database

Detail information of Os07g0267300_circ_ig.2

			
						 General Information
					
						CircRNA Name
						Os07g0267300_circ_ig.2
					
						ID in PlantcircBase
						osa_circ_033372
					
						Alias
						Os07circ05901/Os_ciR414
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 9567266-9567986  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os07g0267300_circ_ig.1 						
					
						Support reads
						2/74/11/2
					
						Tissues
						leaf/root/root/seed
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os07g0267300_circ_ig.2
ID in PlantcircBase	osa_circ_033372
Alias	Os07circ05901/Os_ciR414
Organism	Oryza sativa
Position	chr7: 9567266-9567986 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ig-circRNA
Identification method	SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os07g0267300_circ_ig.1
Support reads	2/74/11/2
Tissues	leaf/root/root/seed
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTAGATCACAAGCTAACCTCTTTAACCTCCTCCACAGCATAGCACAATAAACTCCTTCGGTTGA
ACATCAATAATCACCAGGACAGGGTTAGGAACATAGctgcaagtggtacaaaatctcatgattc
agtccgagctgcccttaaattacaagatctaagtacctacggatctctctgagcctcgcgtcca
gtcctttc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 151
Transcript exons: 9567266-9567357,9567928-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGCACAATAAACTCCTTCGGTTGAACATCAATAATCA
CCAGGACAGGGTTAGGAACATAG
Transcript length: 160
Transcript exons: 9567266-9567357,9567919-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCACACAGCATAGCACAATAAACTCCTTCGGTTGAACAT
CAATAATCACCAGGACAGGGTTAGGAACATAG
Transcript length: 186
Transcript exons: 9567266-9567377,9567913-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCCTCCTCCACAGCATAG
CACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACATAG
Transcript length: 188
Transcript exons: 9567266-9567381,9567915-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCCCTCCACAGCAT
AGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACATAG
Transcript length: 189
Transcript exons: 9567266-9567380,9567913-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTCCTCCACAGCA
TAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACATAG
Transcript length: 194
Transcript exons: 9567266-9567388,9567916-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTCCA
CAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACAT
AG
Transcript length: 198
Transcript exons: 9567266-9567380,9567904-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTCTTTAACCTCC
TCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGA
ACATAG
Transcript length: 199
Transcript exons: 9567266-9567383,9567906-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGCTTTAACCTC
CTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGG
AACATAG
Transcript length: 199
Transcript exons: 9567266-9567390,9567913-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTCTC
CTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGG
AACATAG
Transcript length: 341
Transcript exons: 9567266-9567986
CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTCTG
TTGCAAGCGTGCCTATTGTTGTGTCCTTGACATCCATCAGAAGGTGCTCAACTCCAATTTCCTC
AACCTAGTGGGCAGCTATTTCTGAAGGAACATGAACAAACACCTTTTAACTTTTCTGAGTAGCA
TTCTCTTTAACCTCCTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACC
AGGACAGGGTTAGGAACATAG
						
					

						Genomic sequence
						
							CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC
CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTTTA
ATGACAACAATGATAAACGATATATTAGGGCATAATAAAGCAACTTGTAGGCTGAAAATGCGTA
TTCTTGTGAAATATCACCTCTGTTGCAAGCGTGCCTATTGTTGTGTCCTTGACATCCATCAGAA
GGTGCTCAACTCCTATAAGTAGGATGAACATACATCAGTCAAAAATCCTTTCTGAAGGAAAAAG
ACTTCACCACAAAAAGATTCTTTCTTCTTGGTGAGGAAAACCTCACTAGCATCAAAAACTTAAT
ATATTTATTGCTCAAACGAGCTAACTATTATCTGTAACTTGCAAAATACACATAGCATCCCTTT
TTCCTAGTAAAAACAGATGAAACAGACATACCAATTTCCTCAACCTAGTGGGCAGCTATTTCTG
AAGGAACATGAACAAACACCTTTTAACTTTTCTGAGTAGCATTCTGTAAAAGACAACATGTACA
ATAATGAAGGATAACAGGACAAAAGCACAATAAACTTCCAGTTTCTTAGATCACAAGCTAACCT
CTTTAACCTCCTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGA
CAGGGTTAGGAACATAG
						
					

			
		

Sequences
Splice junction sequence	TTAGATCACAAGCTAACCTCTTTAACCTCCTCCACAGCATAGCACAATAAACTCCTTCGGTTGA ACATCAATAATCACCAGGACAGGGTTAGGAACATAGctgcaagtggtacaaaatctcatgattc agtccgagctgcccttaaattacaagatctaagtacctacggatctctctgagcctcgcgtcca gtcctttc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 151 Transcript exons: 9567266-9567357,9567928-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGCACAATAAACTCCTTCGGTTGAACATCAATAATCA CCAGGACAGGGTTAGGAACATAG Transcript length: 160 Transcript exons: 9567266-9567357,9567919-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCACACAGCATAGCACAATAAACTCCTTCGGTTGAACAT CAATAATCACCAGGACAGGGTTAGGAACATAG Transcript length: 186 Transcript exons: 9567266-9567377,9567913-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCCTCCTCCACAGCATAG CACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACATAG Transcript length: 188 Transcript exons: 9567266-9567381,9567915-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCCCTCCACAGCAT AGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACATAG Transcript length: 189 Transcript exons: 9567266-9567380,9567913-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTCCTCCACAGCA TAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACATAG Transcript length: 194 Transcript exons: 9567266-9567388,9567916-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTCCA CAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGAACAT AG Transcript length: 198 Transcript exons: 9567266-9567380,9567904-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTCTTTAACCTCC TCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGGA ACATAG Transcript length: 199 Transcript exons: 9567266-9567383,9567906-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGCTTTAACCTC CTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGG AACATAG Transcript length: 199 Transcript exons: 9567266-9567390,9567913-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTCTC CTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGACAGGGTTAGG AACATAG Transcript length: 341 Transcript exons: 9567266-9567986 CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTCTG TTGCAAGCGTGCCTATTGTTGTGTCCTTGACATCCATCAGAAGGTGCTCAACTCCAATTTCCTC AACCTAGTGGGCAGCTATTTCTGAAGGAACATGAACAAACACCTTTTAACTTTTCTGAGTAGCA TTCTCTTTAACCTCCTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACC AGGACAGGGTTAGGAACATAG
Genomic sequence	CTGCAAGTGGTACAAAATCTCATGATTCAGTCCGAGCTGCCCTTAAATTACAAGATCTAAGTAC CTACGGATCTCTCTGAGCCTCGCGTCCAGTCCTTTCAAGGCTGCAAGCTTGCTGGTTACCTTTA ATGACAACAATGATAAACGATATATTAGGGCATAATAAAGCAACTTGTAGGCTGAAAATGCGTA TTCTTGTGAAATATCACCTCTGTTGCAAGCGTGCCTATTGTTGTGTCCTTGACATCCATCAGAA GGTGCTCAACTCCTATAAGTAGGATGAACATACATCAGTCAAAAATCCTTTCTGAAGGAAAAAG ACTTCACCACAAAAAGATTCTTTCTTCTTGGTGAGGAAAACCTCACTAGCATCAAAAACTTAAT ATATTTATTGCTCAAACGAGCTAACTATTATCTGTAACTTGCAAAATACACATAGCATCCCTTT TTCCTAGTAAAAACAGATGAAACAGACATACCAATTTCCTCAACCTAGTGGGCAGCTATTTCTG AAGGAACATGAACAAACACCTTTTAACTTTTCTGAGTAGCATTCTGTAAAAGACAACATGTACA ATAATGAAGGATAACAGGACAAAAGCACAATAAACTTCCAGTTTCTTAGATCACAAGCTAACCT CTTTAACCTCCTCCACAGCATAGCACAATAAACTCCTTCGGTTGAACATCAATAATCACCAGGA CAGGGTTAGGAACATAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007120* osi_circ_017693 						
					
						PMCS
						0.429148798

Conservation Information
Conserved circRNAs	osi_circ_007120* osi_circ_017693
PMCS	0.429148798

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Ye et al., 2016;Chu et al., 2017

circRNA

Detail information of Os07g0267300_circ_ig.2

Address

Any questions?

Supported by