Detail information of AT2G27040_circ_g.2


General Information
CircRNA Name AT2G27040_circ_g.2
ID in PlantcircBase ath_circ_015116
Alias 2:11537373-11537637
Organism Arabidpsis thaliana
Position chr2: 11537373-11537637  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G27040
Parent gene annotation Protein argonaute 4
Parent gene strand -
Alternative splicing AT2G27040_circ_g.1 AT2G27040_circ_g.3 AT2G27040_circ_g.4 AT2G27040_circ_g.5 AT2G27040_circ_g.6 AT2G27040_circ_g.7 AT2G27040_circ_g.8 AT2G27040_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G27040.2:2
AT2G27040.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCAGGAGACGTTGGCTGGAAGAACTTGGTATGATGATTCTTTTGAGCCACCAACAAAAGGAA
CTTTGGGTTCCAATTTGCGTCTAAGAGCTTGCAAGCaatcattccagcgtgagcacagaggtag
aaatcattgttctttgggtgacatattttgttgtcaatgattgtccctgcaaaataaccaaaac
ccccatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATCATTCCAGCGTGAGCACAGAGGTAGAAATCATTGTTCTTTGGGTGACATATTTTGTTGTCA
ATGATTGTCCCTGCAAAATAACCAAAACCCCCATGAGATAGAGATCAGCTATGTGTCAAAAAAG
GTTATAATATAGATTTGTCAATCACCTGGAGGAACATTTTCAGGAGACGTTGGCTGGAAGAACT
TGGTATGATGATTCTTTTGAGCCACCAACAAAAGGAACTTTGGGTTCCAATTTGCGTCTAAGAG
CTTGCAAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.133068173
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020