Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d018145_circ_g.1 |
ID in PlantcircBase | zma_circ_008816 |
Alias | zma_circ_0002002 |
Organism | Zea mays |
Position | chr5: 215499194-215501223 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d018145 |
Parent gene annotation |
Presequence protease 2 chloroplastic/mitochondrial |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018145_T001:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.145641802 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
215499329-215499271(+) 215499283-215501218(-) |
Potential amino acid sequence |
MVCINWLLSEEPLDVETELALGFLDHLLLGTPASPLRRILLESGLGEAIVGGGVEDELLQPQFS IGLKGVSEDNIEKVEELVMQTLNNLAEEGFATEAVEASMNTIEFSLRENNTGSFPRGLSLMLRS IGKWIYDMDPFEPLKYEQPLQQLKARIAEEGSKAVFSPLIEKFILKNSHRVTVEMQPDPEKASR DEAAEKEILKQVKASMTQEDLAELARSTKELKEKQETPDPPEALKAVPSLSLQDIPKKPIHVPV EVGEINGVKVLQHDLFTNDVIYSEVVFDMGSMKKEHLQLLPLFCQSLLEMGTKDMDFVQLNQLI GRKTGGISVYPFTSSVRGKEDPLTRIIVRGKAMAPRVEDLFNLNTLTSLKPTLLLMNRRFGHRG YSRNL*(+) MTLTGSLNSLCGQTFDSLGAGLASNWSRYSD*(-) |
Sponge-miRNAs | zma-miR167h-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |