Detail information of Zm00001d047451_circ_g.1


General Information
CircRNA Name Zm00001d047451_circ_g.1
ID in PlantcircBase zma_circ_010040
Alias zma_circ_0003072
Organism Zea mays
Position chr9: 130633672-130637363  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d047451
Parent gene annotation Telomerase reverse transcriptase catalytic subunit variant
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d047451_T003:3
Zm00001d047451_T005:3
Zm00001d047451_T007:3
Zm00001d047451_T011:3
Zm00001d047451_T002:3
Zm00001d047451_T001:2
Zm00001d047451_T015:3
Zm00001d047451_T009:3
Zm00001d047451_T012:3
Zm00001d047451_T006:3
Zm00001d047451_T004:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTGAATTCCTCCAAACGTGTCTCAGTAGATTTGCTTATATCAAGACATACTATCTTCTACA
ATAGAAAGACTTCCTATAACGTCTTCCATGGCAACCattggggatttactcatgtgctatattc
taaggcattcatcaatatttttgcctgttaagaagaatgttttttttcaagtaactggcctccc
gctcaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGGGGATTTACTCATGTGCTATATTCTAAGGCATTCATCAATATTTTTGCCTGTTAAGAAGA
ATGTTTTTTTTCAAGTAACTGGCCTCCCGCTCAATGATTTCCTGCAAAAGCCTATGTTTGCGAG
TGCGGCAAAGAATCAACAACCCCAATCCACGAAAGGAAAATACTTGGTAAGAAATTATGTTCAG
CTGTTCTAAAGAGCACATTCAAATCTTTAGAACACTTTCAAAATAAATCTATGAATTTATGCCT
CAATAGCTCTAACTTTGTTGTAGGAAATCCTATGTTTCTCTTGTGTAGTCCTTGGATTGTTATT
GTTGTTTTAGCTGATTACTTGTCTTTGTGACCTCAGTGCTATCTGTGCCAGAACCCAGAGAGGT
CACAAATCATTTATGGAGGCTATGCCAATAATTCCAAAGTTGCATGTTCAGAACTTCCTTTGAC
TAATGGACCAATAAAGTGTTCCAATTTAGACAATCAAAATTCTAGGAAAAGAAAAAGGCTGTAC
AAATGGCAACGCCTCAAAAAACAGAAGCAGATTTTTCCTAGTTCCGAGGACAAATCATTAACTA
GTCAGAGTGAAATAAGCACCAATGGGTTTGGTGTCCATGATGTTTTATTGGAGGACTTATGTGC
TACAGTGAAGGATAAATCACAGTTTTTGGAACCGACAGTAGATAATGATTCCTTAGCAATGAAT
ATTAGAACTTCCCAGTGTAACAGTACATCAAGAATTCAATCTACATCCCCGCAAGTTGGACTTC
CCAATTTCATGCATCTCAATGTCAGTACTTTCTCAATCATTTCATAAGTTATTATTTCATTCGA
CAATTAGATCTTTTACTATTGTTTCTATAACCTGGTTTGTTTATGTACAAATGACTGTTTTTAA
TACTAAGTATTAGCTTGATGCATCCTTGACTATATGTGGGAGTGAACAAGAGTATGCAAGAAAC
AGGCCCATGCCTTGTGACTAGCACATTTAAACCGTGTCCCAAAAACATATCTTGCTTAAGTTTT
GAGTTACTCATCTGCAAATTGGGGATTCCTAATGTTATTTTTTCCTTTTTAGATGATTGGATCA
GTTTATTTATACCTTTTACTCTAAACCTTAGGATATGGCAATACATTCTCGGAAACATTATATA
TTTGTTTCTGTTAGACTATGTGTGTGTGAGTGTGTGTGGGTCGGCACCACTGTTGGGCTGCCGG
CCCATTAGGGTTAGGGTTTCCTGTGTCTCTATATATTGTAACCCCATCTATCATCAATACGACT
TTACAATTTCACATGGTATCAGATTAGGGTTTCTTTCCTCACTCCCACCCAGCAGCCGCCGTCG
GCTCTCCTCCCACGCACAGCCGCCACCCAGCCCTGGACCAGCCGCCGCCCCCCGGGAGGCTCAT
CCTTCCCTCCCGGGGGCGGCCTCCCTCCTCCCAGCCGCTGCAGCAGAGCCCCTCGCGCCGCCGG
GCCTCGGCCAAGTCTTCTTCCACCTCTAACCTTCAAGCGGCGGCCGCTCGTCGCTCCCTGTCCG
CAGCCGCCGAGCCGCCGGCGCCGCCGCGTCCCCAAGCGGGCTCGGGCGCTGCTCCTCCGGTCGG
GGGCGGCCCTGGCGCGGGGCGCGTCCAGGCGGCCGTGCACGGGCGCGGCCGGCCCCGGCGGCTT
GGGCTCGGGCAGCACCGGCGCGGAGGCACGGGCGCAGGCAGCCCCGACGCGGGCGCGCTGTGCC
GGCTAGGCGCGGCTGCGGCCACGGCCCGCCGGCGAGCTCCTGCCCCCATGGACGCCGGCCACCT
CTCCTACGCGACCGCCGCCGCCGCACCAAGGGGATCCGGAGCCGCCGCCGCCGGGGAGCGCTCC
TTCTTCCACCGTCGGTCGCCGGAGCCGCCCACACCCTCCTTGGCTCGGCGCCCCCTGCTGCGCG
GCCCCTGCCGCGACCCTCCCTGGCGCGGCGCCCCCAAGCCGCCGCCGTTGGTCCGCTGCCCTCT
CCTTTCCCTCATGCCGGCCAGCCCCTCCCCTTTCGGCCAGCCCCTCCCCTTCCCTGGCTGCACG
CATGCCGCCTCACTGGCCGTGGGCGCGGCCCTCCCCTTCCCCGGCCTCCCAAGCCGCCGCCATC
GGATCCGCGCGCCCCTGTGTCTGCGTCGCTAGATTCGCGAGCCTGCCGGCGCGCGCCGGCATTC
TCTCCCTAGTGTCGATCACCTCGACCAGCAGCACCAAGTAGCACCACCCTTCGAACTTCTCCCG
TCGCCGGTGCTGCCAACACCCCTTGCCAGGTCCGGCGCAGGCCCCTGCCCGGCTGGACCCGCCC
CGCCGCCCACCCCTTCATCACCCTCGTTGGATCCGTCGCTGCCGCGGCCTTCCCGGCCGGATCC
ACGTTGCTGCGACCTTTCCGGCTCGATCCGCCGTCCCTTTGGCTGGATCGCATCTTCCCGTTCG
GATCCGTCGCTGCCGTGGCCTTCCCGACCGGATCCGACATTCCCCTTCTTTTCTGCCGCGGGCA
CGGACACCATGACCGGCGCAGACGCGTGCGCTGCCGTCGGCCTCCCTGGCGGGGCTCCTTGACG
CCTGGACGATCGAAGAAGCAAGAAGGTCGACCTGCTGGTGCTCTTTTGTTGTGTCGCCCTGCCG
ATCGTTGACGCTCGAACGTCGACCCCTCCCGAAGATCAGGCTTTTGCTGCGCGTCTTCCGACCG
CGACCACCTCGACTTCGGCTACCTCGGCATCTAGGGGCTATCGTCTTCTTGGAGCACACACCGG
CCTCTACTCCAGCCGCAACATTCGCACCATCATGACGTTGCGACTGCGGGGGGATTTCAACCCG
TCGGCTCCTACCTTCGGCCTCTACTCCAGTCTCATCGTGTGTGGTGCCCCCGTTGCGACTGCGG
GGGGATGTTAGACTATGTGTGTGTGAGTGTGTGTGGGTCGGCACCACTGTTGGGCTGCCGGCCC
ATTAGGGTTAGGGTTTCCTGTGTCTCTATATATTGTAACCCCATCTATCATCAATACGACTTTA
CAATTTCACAGTTTCCTGGTTTTACTTCTAGCATTTACTTTACTTGAGGATATATCAGCATATT
TTAGGAAGCATTACATATTTGTTTCCTGTTTTTCTGTAGCCATCTTCCTCAACACATGGTGGTT
GCTACGTTTTTTTAGAATCCACAAATGAATAACCGTTACCTTTCATAACGTTAGATGTATATGT
ATTGTATTTTCCCTCTACTTTGATATTTTTATTTGCGTTTGTGTATACCTGTACATCTAGCCCT
TTGGGCCTTGTAATACAGTTAGATTAGCCACATTCTAACACATACATTTTGGTATTTCAGTGGG
TACCTTGCAGTTGAAGCGTACAAATCACCATTCAATTTTTTGGTGAATGTGATGTGTACAGTAC
TTATGCAACTAATTCTTTTTGCATATATTGATTGTTCATATAAGTTTTTTTTGCTGTTGCATCT
TAGCTTTGAGTGTTCTTGAAATTAAGAGGTCTGAGCAATTTAATATCTTATTCATGATATCATG
AATCAATAATACAATTAATGTTTGTGTTATGTCTTTGACTTACAGAATGGTCTCATCTGCTTCA
ATTGCTTAATGTTGAATTCCTCCAAACGTGTCTCAGTAGATTTGCTTATATCAAGACATACTAT
CTTCTACAATAGAAAGACTTCCTATAACGTCTTCCATGGCAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.092104115
Functional Information
Coding potential Y
Potential coding position 130633688-130633727(+)
130637356-130633727(+)
130633690-130637308(-)
Potential amino acid sequence MCYILRHSSIFLPVKKNVFFQVTGLPLNDFLQKPMFASAAKNQQPQSTKGKYLCYLCQNPERSQ
IIYGGYANNSKVACSELPLTNGPIKCSNLDNQNSRKRKRLYKWQRLKKQKQIFPSSEDKSLTSQ
SEISTNGFGVHDVLLEDLCATVKDKSQFLEPTVDNDSLAMNIRTSQCNSTSRIQSTSPQVGLPN
FMHLNNGLICFNCLMLNSSKRVSVDLLISRHTIFYNRKTSYNVFHGNHWGFTHVLYSKAFINIF
AC*(+)
MATIGDLLMCYILRHSSIFLPVKKNVFFQVTGLPLNDFLQKPMFASAAKNQQPQSTKGKYLCYL
CQNPERSQIIYGGYANNSKVACSELPLTNGPIKCSNLDNQNSRKRKRLYKWQRLKKQKQIFPSS
EDKSLTSQSEISTNGFGVHDVLLEDLCATVKDKSQFLEPTVDNDSLAMNIRTSQCNSTSRIQST
SPQVGLPNFMHLNNGLICFNCLMLNSSKRVSVDLLISRHTIFYNRKTSYNVFHGNHWGFTHVLY
SKAFINIFAC*(+)
MSKSPMVAMEDVIGSLSIVEDSMS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b