Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d047451_circ_g.1 |
ID in PlantcircBase | zma_circ_010040 |
Alias | zma_circ_0003072 |
Organism | Zea mays |
Position | chr9: 130633672-130637363 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d047451 |
Parent gene annotation |
Telomerase reverse transcriptase catalytic subunit variant |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d047451_T003:3 Zm00001d047451_T005:3 Zm00001d047451_T007:3 Zm00001d047451_T011:3 Zm00001d047451_T002:3 Zm00001d047451_T001:2 Zm00001d047451_T015:3 Zm00001d047451_T009:3 Zm00001d047451_T012:3 Zm00001d047451_T006:3 Zm00001d047451_T004:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.092104115 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
130633688-130633727(+) 130637356-130633727(+) 130633690-130637308(-) |
Potential amino acid sequence |
MCYILRHSSIFLPVKKNVFFQVTGLPLNDFLQKPMFASAAKNQQPQSTKGKYLCYLCQNPERSQ IIYGGYANNSKVACSELPLTNGPIKCSNLDNQNSRKRKRLYKWQRLKKQKQIFPSSEDKSLTSQ SEISTNGFGVHDVLLEDLCATVKDKSQFLEPTVDNDSLAMNIRTSQCNSTSRIQSTSPQVGLPN FMHLNNGLICFNCLMLNSSKRVSVDLLISRHTIFYNRKTSYNVFHGNHWGFTHVLYSKAFINIF AC*(+) MATIGDLLMCYILRHSSIFLPVKKNVFFQVTGLPLNDFLQKPMFASAAKNQQPQSTKGKYLCYL CQNPERSQIIYGGYANNSKVACSELPLTNGPIKCSNLDNQNSRKRKRLYKWQRLKKQKQIFPSS EDKSLTSQSEISTNGFGVHDVLLEDLCATVKDKSQFLEPTVDNDSLAMNIRTSQCNSTSRIQST SPQVGLPNFMHLNNGLICFNCLMLNSSKRVSVDLLISRHTIFYNRKTSYNVFHGNHWGFTHVLY SKAFINIFAC*(+) MSKSPMVAMEDVIGSLSIVEDSMS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |