Detail information of Zm00001d027324_circ_g.3


General Information
CircRNA Name Zm00001d027324_circ_g.3
ID in PlantcircBase zma_circ_000502
Alias circ88
Organism Zea mays
Position chr1: 2967072-2969893  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d027324
Parent gene annotation THO complex subunit 1
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d027324_T002:10
Zm00001d027324_T003:10
Zm00001d027324_T001:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGGTGATATTGCATGCTTTCTTGCATTGTAGGAAGCCAAGGTGGAGACTGGGAAGCAAAGAG
CTCAGCCAACTTTGGAAATGGGCAGAACAAAACCCCggcaaatgatgtggtgttctgtgggcgc
attattatgtttcttgcacattttttcccattatcggagcgttcaggtctgcatattatatttc
cctctccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCAAATGATGTGGTGTTCTGTGGGCGCATTATTATGTTTCTTGCACATTTTTTCCCATTATCG
GAGCGTTCAGGTCTGCATATTATATTTCCCTCTCCCCATTCTCCCATAGTTGGTCTCTTACGGG
TAAACTGTGTATAAACGTCTCTGTACACCATTCATTTTGTTTGTCTACTTTAACAGCTCTCAAC
ATTAAAGGGGTTTTCAATACATCAAATGTAACAAAGTACGAAAAGGATGCTATGGATGGTGAGT
ATAACTCATCTATGTTAATGCTGTAGTGTTTTATTTTGTTTATTGCACCTGACCTCTGCAGATG
AGTTGTTTTTTTGGTTCACTTTTGTAATCTATCTCCCTAAATGTGATGTCGTCATGTATGCTTT
CATTCATCAGGAATCTCTGTTGATTTCAACTTCTACAAGACCCTCTGGAGTCTACAGGTTAATA
TTTGGCACTTCCAGCTATTCTATGGAGTTGGAAATTGTCACTAGATGTCCCACATTCTTCTTAA
GCATCAACATTTTTTAATGGTCACTTTTTGAATATTTATGTATCAGGAACATTTCAGCAACCCA
GCTTTGACTTCTACAAATCCGGCAAAATGGCAAAAGTTCTCTTCTAATCTGGCGGTACGGCCTT
TCATACAATTTTCTTCCAGTGACATACTTCATGGTCACTTTGCAATACTGTGGTCTGTGGCCTC
ATTCTGAACATCTGGTACTAAGTTAAGCATTAACTTCATTCCAGGTTGTGTTGAACACATTTGA
AGCTCAACCTCTTAGCGATGATGATGGAAAACTTAACAATCTGAACGAGGAGGAAGATGCTGCT
TTCAATATTAAGTACCTGACTAGCAGTAAATTAATGGGTTTGGAGGTAAAAGTTTTTGAGCAAG
TGCTCTACTTTCCTTTTATTGTTCACAGTTGTGATATAATCATTCTATTCTTTCAGTTGAAGGA
CCCAAGTTTTCGACGCCACATCCTTGTTCAGTGTCTTATATTTTTTGACTATCTCAAGGTACAT
AAATCATACAACACAAATTCTAATTAATTGTTAATACTTAAGCCACTCCTCTATGTTGTACACC
TATGCACACTTGTGTGAGTACATGCACTTTAATGTCTCGTTTTTATGTTACAATACTGTTTTGC
TGTTATTCATTTCATTTGACTAGTCTGTTACGGTCACTGAAGTGCAAACTGCTGAGAAAGTTAT
TTTGTTCCTCAGGCACCTGGGAAAAATGACAAAGAAGGTCCAACAGGGAGCATGGTGAGCACTG
AGACTTATCATTATTTTTTATGCAGTTATATACTTGACATGAACATTTCTACATATTTGTTCTT
CAAAATTTCGATTCAGCTAATTTGACCACCGCTGGTTCTCACGAAATCCCTTCTTAAGCATCGT
GTGCCTGTATCTACTGGACTGCATATTTACACATATAATAGTTCATAGCTTGATAATGTCCCTC
CAATATTTATACATGAAAGCTAAACCCTAGATAACAAATAATTGAGTGCCATTTTCCAAAAACA
GGCGAAGTGTTGGATGACTATCTGATGGTGTGTAGGTTCTTCGATTTAGAAATGTCAGGATGCA
CTCAAAAGAATCTAGAATAGTGGTCTGTACTATTGTTAAGAATCTAGGATGTACTCAAGATAAT
GTCCCCCAAAACAATGCCCCACGTACATCTTGTCTCCCATGTCTCCTGCCCCAGCTGAACCCAA
TCATATTCTTCCTGCTCCCTAAGTGAGACAATATTATATACATGATACATCTCATCCACATGCA
TGGGAAATTTGGTCACCCTCCCTACTCTCCTAAATCCCATACAAAGTTTCATACACTAGCTTTG
TGTGGGTTTAACACTAGTTTTTACTAGTTGCTGATTTCATGGCTTGCACCGACGAAATTTAAAG
ACATGCTTTTTATATGGATAAAAATAAGCTGGTCCAAAGACTAAGTTGGTGGTTTGCTCTGAGT
GTATGCAGGAACAAGATGATCTTTGAATCGTTTGAACTGACTAAGCTATTTCTTTCATTATTGA
TGACCCTCAAACCATGGTTCAACACTTCAACTATGAATAATTTGTCTTTTATATTTTCCCTTCA
ATCAGATAGAGGAAATTAAATCTTGTGAAGAGCATGTTAAGAAGCTTCTGGAAATTATTCCCCC
CAAAGGGAAGGAATTTCTGAAAAGCATTGAACATATTCTTGAGCGGGAGAAAAATTGGGTATGC
TTTTTACTCACATGGTTCAAGTTTTTTTACCTTTATTGTTGGAACTTACACAACCAATGATCCT
CATCCTTTATATCTTGAAAAAGGTTTGGTGGAAGCGAGATGGGTGTCTCGCATTTGAAAAGCCA
CCCTTTGAAAAGAAACCAGGTCAGGCTGGTGCCAGAAAACGGTATACTACTTGCTTAAGGCACC
GAGCTCACTGTCACCCAATTATTTCTATTGATCATCTCATCAAAATTTAGTGGCTTAGATCTGG
TTAGGAAAATTAACAAGAGAGAAACTATAGTAACAGGATTGTATGCATTATTAAATTATCAAAC
TTAAAACTTATATGTGAGAAAGACTCTCCAATCATATAGTTCATGTTATGATTCTGCTAAGGTA
AAAGAAAACATGGAGATATTTTGCACAATGTATAAGTCATTAATGTAGCAATCCGAAAGCCAAG
TGATGTTCTTTTTTTACCTCTTCCCTTTTATAGTCAAGGTGATATTGCATGCTTTCTTGCATTG
TAGGAAGCCAAGGTGGAGACTGGGAAGCAAAGAGCTCAGCCAACTTTGGAAATGGGCAGAACAA
AACCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.132065494
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b