Detail information of Os05g0292200_circ_g.1


General Information
CircRNA Name Os05g0292200_circ_g.1
ID in PlantcircBase osa_circ_027251
Alias NA
Organism Oryza sativa
Position chr5: 12868243-12871445  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0292200
Parent gene annotation Similar to Transcription factor IIA large subunit (TFIIA-L1). (O
s05t0292200-01)
Parent gene strand +
Alternative splicing Os05g0292200_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0292200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCTGGTTTATACAGGTGACAAGGACAAAGAACCGCTGGAAATGCACTTTGAAGGATGGAATC
ATGCATTTAAATGGCCGAGATGTTCTATTCAACAAGgattttctaatgatgtcctctgggaaac
gcaagagggatgaatatcctggtcagctcccttctggttcttttgtgccacaacaagatggaag
tgcagatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 570
Transcript exons: 12868243-12868368,12870740-12870868,12870945-12870999,12
871092-12871267,12871362-12871445
GATTTTCTAATGATGTCCTCTGGGAAACGCAAGAGGGATGAATATCCTGGTCAGCTCCCTTCTG
GTTCTTTTGTGCCACAACAAGATGGAAGTGCAGATCAGATAGTTGAATTTGTTGTCTCAAAGGA
CAACGCACAACAACTTTGGAGTTCCATTGTGAACAAGCAAGGAACAGCAACAAAAGAATCTTCC
ACAAAGGAAACAATAATTGCTCCAACGATTCCTCAACGGGATGGGATGGATGACTATAATGATC
CATTTTACTTCCAAGGAGTTCCAACTGAGGATTACAATACCCCTGGAGAATCGTCGGAATACCG
AGCTCCCACACCGGCTGTTGGAACACCAAAACCGAGAAATGATGTAGGCGATGATGATGAGCCT
CCGCTTAATGAAGATGACGATGATGATGATGAGTTAGATGACCTTGAGCAAGGGGAGGATGAGC
CTAACACACAGCACCTTGTCCTCGCACAGTTTGACAAAGTGACAAGGACAAAGAACCGCTGGAA
ATGCACTTTGAAGGATGGAATCATGCATTTAAATGGCCGAGATGTTCTATTCAACAAG

Genomic sequence GATTTTCTAATGATGTCCTCTGGGAAACGCAAGAGGGATGAATATCCTGGTCAGCTCCCTTCTG
GTTCTTTTGTGCCACAACAAGATGGAAGTGCAGATCAGATAGTTGAATTTGTTGTCTCAAAGGT
ATTATTCATTAATGGAAAGTGCAATTCAGTATCACAATTTGTCTTGCACTTCAATCTCATAAGT
ATGTGTGGTAGTGCTCCTTAGAGTTGTTTAAGGATGCCACTATAGATTTGGTCCCTATCTGATC
CTTAGGCCTTGTTGAAAAGGGAGGGTTTGGATTTGAATCCTTACTCTTCGATGGTTCATGGAAC
CCAGTCAGGTTCAATAATTGGAGCAATGCAAGTATATGTCAACTAGTATATGTCAAGAATGTAC
GTGGCTATATAGTTTGGTAGATTATAGAGCCTTTCTCTACTCTTATGAATTCATCTTCTGTTAT
ATGTCCATAAAATTGTTTCAAACCGCCTATTTAGTACCAAGGTCTTTTGAATTCTTGATATGGC
CAAATGTCTGACTCTCTGTAGAGTGTTGATTTTTCATTGTTGCAATGCCAAGAGATATCCTTGC
ATATGCACGAGTGGATGGCAATTTAAACATCCAAAATTCATTAACTGTCATGTCACATTTCTAA
CAGTAACTAGTGGGTTTGCATGTGGAACCCATGTAGCCAAGAAAATATAACAAGTAGGATGTAA
ATATGAGGGGGAACGGTAGGATGTGCTGCATGTGCACCGGGAGGGGTGAGATGAGTTGAGTGGC
GTCAGGCTGTCAGTGGGTGTCTGGTTGGTGGTTTTGTGGGCTGGGCAGTATGGCATAATTAACA
GGAAGTATAATTAGTGGTGAAATTCTAATTGAAATGAGGATAATTGATGTATAAATTAATGGTT
AGGAGGGATGCATGCTTTTCATATTGGTTTATATAATACAGCTCCAACACATGCGAGGGCTCTC
AGTTTCTTTTGTTGTACTTGCATTTTTGTCTGTCCTATCACGTTGATATACTATATTGGAGTAT
ATTTGTCATCTAAGTAGATGTATTGATTGACTAGTTTAAACTGTCTAAACCTTTATATGAATGA
TATGTTGTACTCTATGGCATGCATATATATAATGTTGGCTGTATTACATGAATAACATCCACAT
ATGTTTTAAACAGTCTGTAGCAAAAGCATACCAACATACTTGTTTTATAGTGGATAGCAGAAAC
TATTTGCTGAGCTACAGAACATGTACAATATTTCAATCTTAAACTAACATCCCCATCGTAAATG
CACATAATTTCCTTATTATGAAATATCACAATTTTTTTGTTCCTTTTCTTGTTCTGTTGAGTTG
TACTGTTCCATGTCATCTTTTAATTGCCATGATAGATAACCAATACAACCTGATACCAAACTCA
CCACGAGAATAGGAAATTGAACTGAAAACAGTATTGGAAATGTTCACTCAGTGAAGCGCGTACA
AGTATCACAGCACATAAATATTGATCGATTCATTTTTTGTTCCTGAACCTAAGAACTATCATTT
TCCATGCATGTGCTTCCGTCCATATGTGGTTAAAACTGGCAGGGCATGTCATGGCATGTTAAAG
AAAAAATGTTTTAGGCAAACCGTTTAACCCAGCAATAATTGAGGTTGTATGAAAATCATACATG
CATCAGCTTATCCCCAGCTGAAAATGGACTGATGCTGGTTTTCATACTTGGGTTAACTGCTTAT
GATCACCACTAGTGTATATCTTGTGTGGTGGCCTGCTGTAATGGAGATATACTAGCATTATACA
TGAGCAGTGCTAATCGTATATGGTAGCATTTGTGTGAAGAATTGTCCTGGTAGAAATGAAATTA
CTTGGACTAATTTTACTGAACATTTCACTGGGTGATAGGTAGCTTGATGTATTTAAGTGGTGAT
GGTGTATTGGTTTTTGGAAGTACTTCCCAGACTAAGAAAATCATACTTTGTAACCGAGTAGTTA
GCTAGTATAGTATTAGGTTTGTGATAACTGAATCAATGAGGCAATTAGGATCCACAGATGGAAT
TTTCTAAAAGAATTTGAGAAATCTAATGGTAATTTTCTAAGCCAACGCAGTAGAATTTTTTACT
TTATGTGCACACTGGAGAACTCTTTATGTATGAATTCTTGAGCTTGCTTAATACTGGCTTGAAC
TCAAGAGTTCGTTGTGTTAGTAGGATAATTGAACTTCATGTTTCTCTTCTTTGTAAATATTTGG
ACACTTTTGAGCAAAATTTATGAAAGTTTTCTGTATGGAAATGAGGATATATTGAATATATGCA
GTAAATTGCAATTCAATTTATCATATCTTCAATTCATGATGCATTCTTATTCTTGTCCTGTAGT
TCTCATCCTGCTCATGTTCTGTTTTACCATATACTGTTAACAAGTGCTTAATTAGATAATTTAA
ACCAAGCTTCTAATATTACCATTTTGTGTGAGGAATCCTCATTCTCCTTTTGGTCCTTTTTTTA
GGACAACGCACAACAACTTTGGAGTTCCATTGTGAACAAGCAAGGAACAGCAACAAAAGAATCT
TCCACAAAGGAAACAATAATTGCTCCAACGATTCCTCAACGGGATGGGATGGATGACTATAATG
ATGTATATTTCGAATTCATCAATGGTTTTTTCTTATATTTTTGAATTTTCGCGACTAACTGGGC
TGTGTCTATTTCAGCCATTTTACTTCCAAGGAGTTCCAACTGAGGATTACAATACCCCTGGAGA
ATCGTGTAAGTTTCTCATGAAACCATGGAATTTGATCTTGTTTGAGAGATTAGTGTCCATGTTG
CTGATTTTACACATGTTTTAATTTGTTCCTTAGCGGAATACCGAGCTCCCACACCGGCTGTTGG
AACACCAAAACCGAGAAATGATGTAGGCGATGATGATGAGCCTCCGCTTAATGAAGATGACGAT
GATGATGATGAGTTAGATGACCTTGAGCAAGGGGAGGATGAGCCTAACACACAGCACCTTGTCC
TCGCACAGTTTGACAAAGTAGTGATGCTTCCTTTTGTTTAATAATATTGAAGTCGATTAGGTTT
TCCTCTATTTAGTGTGTCATGCTTTATCTATTCGCTGGTTTATACAGGTGACAAGGACAAAGAA
CCGCTGGAAATGCACTTTGAAGGATGGAATCATGCATTTAAATGGCCGAGATGTTCTATTCAAC
AAG
Conservation Information
Conserved circRNAs NA
PMCS 0.212862228
Functional Information
Coding potential Y
Potential coding position 12868253-12871442(+)
12871389-12868280(+)
12870950-12871440(-)
Potential amino acid sequence MMSSGKRKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKE
TIIAPTIPQRDGMDDYNDPFYFQGVPTEDYNTPGESSEYRAPTPAVGTPKPRNDVGDDDEPPLN
EDDDDDDELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKDFLMM
SSGKRKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKETI
IAPTIPQRDGMDDYNDPFYFQGVPTEDYNTPGESSEYRAPTPAVGTPKPRNDVGDDDEPPLNED
DDDDDELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKDFLMMSS
GKRKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKETIIA
PTIPQRDGMDDYNDPFYFQGVPTEDYNTPGESSEYRAPTPAVGTPKPRNDVGDDDEPPLNEDDD
DDDELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKDFLMMSSGK
RKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKETIIAPT
IPQRDGMDDYNDPFYFQGVPTEDYNTPGESSEYRAPTPAVGTPKPRNDVGDDDEPPLNEDDDDD
DELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNK(+)
MHFEGWNHAFKWPRCSIQQGFSNDVLWETQEG*(+)
MDHYSHPSHPVEESLEQLLFPLWKILLLLFLACSQWNSKVVVRCPLRQQIQLSDLHFHLVVAQK
NQKGADQDIHPSCVSQRTSLENPC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017