Detail information of BGIOSGA034057_circ_igg.1


General Information
CircRNA Name BGIOSGA034057_circ_igg.1
ID in PlantcircBase osi_circ_008985
Alias Chr11:15316222_15319008(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 11566063-11567713  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCCAAAAAAAATTCGACGGGAATTTCTCACCAAACCTAAAGTCGCTGTTCGCTCTCCCCCTC
CGCCTCACCTCATTGCCCGCCACACAGAAACCGCATctgtgaaaggaggtgtaattttttgcac
tgttgcttctccttgacgataaccatcacgggtccccgatagcaaccgcccaccatggtgtttt
cctcgagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGAAAGGAGGTGTAATTTTTTGCACTGTTGCTTCTCCTTGACGATAACCATCACGGGTCCC
CGATAGCAACCGCCCACCATGGTGTTTTCCTCGAGTGCCCCCTCCAGCCTTGGGGCAGCAGGTT
TGTGCCTTCTGCAGGTGCTACCCATCCTCAACATGGCATCTATGCCGTTCTCTTCAATGTTGGC
GGCGGCAAGGCAGCTTTTTCTGTTGCTGCTCCCTTGATCTGGAGGAGCAGTGAGCCAGTGACAC
AGGATGAAAACTAAAAGATGCGTCTAAGTATTAGAGCAAATAGCAGAGACAATAAAGATTACAT
ACACAGGAGAATTACTGTAGTACACTAACTTCACCCACGCACTTGCTCGACTTCAGCCCACAGC
TCATTGACTTGCTTAGGCATGCAGTTGTTGCCCCCCTAGCTAACTCCTCGCTTTGCTCATACAA
GTATTGCTTCTGGAGAAAATTTTGTGAGGTCTTAAAGATACCTACAGATCCACAACAAGCTACC
TTTAAACGCAGCTCAATCTATAACTTTAGTGAAACTAAGGTTTCACTTATTGGCATCAAATTTA
AACTAAGCCCGAGGAAAAACCCAGCGAAGTGGGCTTTACCTCCATTCCTTGGTAACTAACAAAG
CAATCTTGACAAAAAAAATATATAATTTTAATCCCTTTAAATTCCAACCCTCTTAGCTACACTG
TAATTATTATATACATGCTTAAAACATCATAGGAAATGAAACATAAATATCAATTCTGCTTGTC
CTGCAAACCATTAGTAGTAGATCTTCCTAGTGACTCTCATAGTCTCCTTATCCTGAAAATCAGG
AGCATATCACTACTTCATTAGCAGTCAAGGACATCATTTCAGATTCATAAATGAATGAGAACAT
GTTAGCAGGGAATAGTTAATATTATCAACAGAGTATATAGCCACATATAAATTACTAATATTAG
TACATCTCAAAAGCAAATATATATGTTATTGACATCAATATCCAATGAAGTAAAATTCATAACC
AATTTTCTGATAAGTGATGCACTGCCTATGTACCTTTTCATTCTCTCTGACAAGGCTGCACAAA
AGCTCAGCCCTAATTGCACTCATGAGAAAAGGGCAGGGTAACCGAAACTAGAAGCACTAACAAA
CAATATCCTTATTTGTTAAAAGACCAGAAAGTAAATTATACTCACAATAATAGTTCAGTTCTTT
AGTAATTTACCTCCAAGATTCAATCCAACTGCATTTCACAATGTTGTTAAGGATTAATTTCTCC
CGGCCCTTAGATCTTAGATCTAAGTATAACTAATTACTTAGATCTTACCAAGTAGTACCATGTG
GGTTCCACATGTGATTGTCACGCAAAAATAAGATTGCAAAATCGGCCAACATTGATTATATTTG
AGTACAAAGAAATAAAATATCCAATGTTCTACAGTTATATTATATATAGCCTATAGGCAGGGTT
GGAAATTTCGGACCGAAATTTCTGAAATTTCGGCCGTTTTGGTGGGTCCCGATAGTAAGTGCGT
TCCGGTCAAATATTTCGGCCAAAAAAAATTCGACGGGAATTTCTCACCAAACCTAAAGTCGCTG
TTCGCTCTCCCCCTCCGCCTCACCTCATTGCCCGCCACACAGAAACCGCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021