Detail information of BGIOSGA001325_circ_ig.1


General Information
CircRNA Name BGIOSGA001325_circ_ig.1
ID in PlantcircBase osi_circ_010220
Alias Chr11:15485954_15486605(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 25470225-25470876  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AG-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCACAATGTAGCTCCAATAGGCCATCCTTTGCTGGCTCTGAACATTCTCATGGTTTTAGTTC
ATTTTTCGGACACGTCCTACAGAAAAGCAAACTACAgctactgcaatggcgctccttgaaaaga
tcaattacagcaggcagcacatcttcatacttagctttgcttctgaaactgcatgcaaacagtt
tgtaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTACTGCAATGGCGCTCCTTGAAAAGATCAATTACAGCAGGCAGCACATCTTCATACTTAGCT
TTGCTTCTGAAACTGCATGCAAACAGTTTGTAAATTCAATATGACATTGCTCTCCAAAAGTTTT
TTCATATGCACATTTAAAGTGTTAGATACTACCATCATTGTAAAGTTTCCCTATCCATAATGCC
ATCCAATTTGTGAATGAAATATGGGTGCTAGGTGCATACCCACCATGTCTCAGAACCACAACAA
GGGTTTATATAGTTAAAAAGCAGTAGCCTAAATAAAAATATAGCGAGTGATGGTACATAAGTAT
TACCAACTCCTAAAAAATAGGCGTCTACTTTCAGTGGCTCAAACGTGAGACTTCCAAACTCAAA
TCTAAAAAAATAACTATTATGCATAGAACAGAATTTAGGTACACCTCATAGTAGTAAAGCAGAT
AAAAGGAAATTATGCACAAATAGATCATGAGCAATATTTTAATTTATCAAATAACAGTAAAAAG
AAACTGGCAAATTTTTCTTGTATCTTACCACAACATGGCACTTCACAATGTAGCTCCAATAGGC
CATCCTTTGCTGGCTCTGAACATTCTCATGGTTTTAGTTCATTTTTCGGACACGTCCTACAGAA
AAGCAAACTACA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021