Detail information of Os08g0521400_circ_g.1


General Information
CircRNA Name Os08g0521400_circ_g.1
ID in PlantcircBase osa_circ_037737
Alias NA
Organism Oryza sativa
Position chr8: 25937531-25938172  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os08g0521400
Parent gene annotation Similar to Zn-finger, RanBP-type, containing protein. (Os08t0521
400-01);Similar to Zn-finger, RanBP-type, containing protein. (O
s08t0521400-02);Zinc finger, RanBP2-type domain containing prote
in. (Os08t0521400-03)
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0521400-01:3
Os08t0521400-02:3
Os08t0521400-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATATGGCTATGGTGGCCGCCTGCCAATGGGGAGCCCCTATGGGCCGCCGATGCATATGGCAG
GGCCTCCATATTCTGCTGGATCCATGATGGGACCAGgtcgacaaccgtagccaatctgctggaa
agcgtgcccgcaccgacggtaggtcgcttcgccgcggcgattaacctgcggctttcctttactg
tttaagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGGTAGGTCGCTTCGCCGCG
GCGATTAACCTGCGGCTTTCCTTTACTGTTTAAGCTGCATCTGAGGGGAATTTCATTTTTGGTA
TGGATGACGACTCACAGGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTC
AACTTCGCCTTCCGCACCACCTGCAACATGCGCAATTGCAACCAATCCAGGCCCACCGACTATA
CGGTACATGTGATTGCCACCGATGCGCGCTCATGTGGTTGATTAGTTCCGCTCATCGTGATTTT
TGCATTTACCTAGTCGTGCTGTTGCCTCCTCTCCAGAAGGATATGCAGAAACCTATGCAGACAC
CGCCGCCCCATTTCCCCATGTCAGGGGGATACATGAGCCCAGGGACGCCGCCATCCATGTACCT
CGGGGGTGGTGCTCCCCCTTATGGCACCTCCCTCTATGGCGGACCTGCTTTACCACGTTATGGT
ATTGCTCAGTTCCCTGGGGGTTCTGGATATCCATATGGCTATGGTGGCCGCCTGCCAATGGGGA
GCCCCTATGGGCCGCCGATGCATATGGCAGGGCCTCCATATTCTGCTGGATCCATGATGGGACC
AG
Conservation Information
Conserved circRNAs osi_circ_018086
PMCS 0.153420626
Functional Information
Coding potential Y
Potential coding position 25937751-25937541(+)
25937927-25937905(-)
25937753-25938030(-)
Potential amino acid sequence MRNCNQSRPTDYTKDMQKPMQTPPPHFPMSGGYMSPGTPPSMYLGGGAPPYGTSLYGGPALPRY
GIAQFPGGSGYPYGYGGRLPMGSPYGPPMHMAGPPYSAGSMMGPGRQP*(+)
MGRRCLHRFLHILRIVGGPGLVAIAHVAGGAEGEVDVLAAGANPVVLTPPTVGAGTLSSRLATV
VDLVPSWIQQNMEALPYASAAHRGSPLAGGHHSHMDIQNPQGTEQYHNVVKQVRHRGRCHKGEH
HPRGTWMAASLGSCIPLTWGNGAAVSA*(-)
MLQVVRKAKLTFWQLGQTQSSSRRPPSVRARFPADWLRLSTWSHHGSSRIWRPCHMHRRPIGAP
HWQAATIAIWISRTPRELSNTITW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017