Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os08g0521400_circ_g.1 |
ID in PlantcircBase | osa_circ_037737 |
Alias | NA |
Organism | Oryza sativa |
Position | chr8: 25937531-25938172 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os08g0521400 |
Parent gene annotation |
Similar to Zn-finger, RanBP-type, containing protein. (Os08t0521 400-01);Similar to Zn-finger, RanBP-type, containing protein. (O s08t0521400-02);Zinc finger, RanBP2-type domain containing prote in. (Os08t0521400-03) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os08t0521400-01:3 Os08t0521400-02:3 Os08t0521400-03:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_018086 |
PMCS | 0.153420626 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25937751-25937541(+) 25937927-25937905(-) 25937753-25938030(-) |
Potential amino acid sequence |
MRNCNQSRPTDYTKDMQKPMQTPPPHFPMSGGYMSPGTPPSMYLGGGAPPYGTSLYGGPALPRY GIAQFPGGSGYPYGYGGRLPMGSPYGPPMHMAGPPYSAGSMMGPGRQP*(+) MGRRCLHRFLHILRIVGGPGLVAIAHVAGGAEGEVDVLAAGANPVVLTPPTVGAGTLSSRLATV VDLVPSWIQQNMEALPYASAAHRGSPLAGGHHSHMDIQNPQGTEQYHNVVKQVRHRGRCHKGEH HPRGTWMAASLGSCIPLTWGNGAAVSA*(-) MLQVVRKAKLTFWQLGQTQSSSRRPPSVRARFPADWLRLSTWSHHGSSRIWRPCHMHRRPIGAP HWQAATIAIWISRTPRELSNTITW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |