Plant Circular RNA Database

Detail information of AT4G32410_circ_g.21

			
						 General Information
					
						CircRNA Name
						AT4G32410_circ_g.21
					
						ID in PlantcircBase
						ath_circ_034056
					
						Alias
						Ath_circ_FC2927
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 15645314-15645780  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						KNIFE, PcircRNA_finder
					
						Parent gene
						
							AT4G32410						
					
						Parent gene annotation
						
							Cellulose synthase
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT4G32410_circ_g.2 AT4G32410_circ_g.3 AT4G32410_circ_g.4 AT4G32410_circ_g.5 AT4G32410_circ_g.6 AT4G32410_circ_g.7 AT4G32410_circ_g.8 AT4G32410_circ_g.9 AT4G32410_circ_g.10 AT4G32410_circ_g.11 AT4G32410_circ_g.12 AT4G32410_circ_g.13 AT4G32410_circ_g.14 AT4G32410_circ_g.15 AT4G32410_circ_g.16 AT4G32410_circ_g.17 AT4G32410_circ_g.18 AT4G32410_circ_g.19 AT4G32410_circ_g.20 AT4G32410_circ_g.22 						
					
						Support reads
						29
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G32410.1:2

General Information
CircRNA Name	AT4G32410_circ_g.21
ID in PlantcircBase	ath_circ_034056
Alias	Ath_circ_FC2927
Organism	Arabidpsis thaliana
Position	chr4: 15645314-15645780 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	KNIFE, PcircRNA_finder
Parent gene	AT4G32410
Parent gene annotation	Cellulose synthase
Parent gene strand	-
Alternative splicing	AT4G32410_circ_g.2 AT4G32410_circ_g.3 AT4G32410_circ_g.4 AT4G32410_circ_g.5 AT4G32410_circ_g.6 AT4G32410_circ_g.7 AT4G32410_circ_g.8 AT4G32410_circ_g.9 AT4G32410_circ_g.10 AT4G32410_circ_g.11 AT4G32410_circ_g.12 AT4G32410_circ_g.13 AT4G32410_circ_g.14 AT4G32410_circ_g.15 AT4G32410_circ_g.16 AT4G32410_circ_g.17 AT4G32410_circ_g.18 AT4G32410_circ_g.19 AT4G32410_circ_g.20 AT4G32410_circ_g.22
Support reads	29
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G32410.1:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							ATTCATTACACGCGACAAAGACATCTCCAGTTTCAGCGAGTCCAACATCATCACCACAGATCTG
ACATATCTGGCCATTCATATTCTTCAAAGGTTTGGTcgtatggccatgggtgagaagaggaatt
ggttgagattcatgtctagaggaagaagaaaactcttcgccatggcgttggtgtctcgccttgt
tagctccc

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 369
Transcript exons: 15645314-15645486,15645585-15645780
CGTATGGCCATGGGTGAGAAGAGGAATTGGTTGAGATTCATGTCTAGAGGAAGAAGAAAACTCT
TCGCCATGGCGTTGGTGTCTCGCCTTGTTAGCTCCCTGGGCGTAATTGAACTCATTCTCGATAT
CATCAACATCATCCTCATCTTCATCTCCTTCAACACGAGGACTCCCCCTGTGTCGTCTGAATCT
AGTCTTGCATTGAGGGCAACACTGAGTTCCATCTTTCCTCTCGTACTCATAGCAAGGCCGACAC
ACAGGGAAGGCACATTCATTACACGCGACAAAGACATCTCCAGTTTCAGCGAGTCCAACATCAT
CACCACAGATCTGACATATCTGGCCATTCATATTCTTCAAAGGTTTGGT
						
						Genomic sequence
						
							CGTATGGCCATGGGTGAGAAGAGGAATTGGTTGAGATTCATGTCTAGAGGAAGAAGAAAACTCT
TCGCCATGGCGTTGGTGTCTCGCCTTGTTAGCTCCCTGGGCGTAATTGAACTCATTCTCGATAT
CATCAACATCATCCTCATCTTCATCTCCTTCAACACGAGGACTCCCTGGAAAATTCCAAAAAAT
TGTTCAACACAACAGCAAAGAAACAAAAAGAGAAAATCCATATATAGCAATTGCCAACAAAAAG
AAAAAGACAACTGACCCCTGTGTCGTCTGAATCTAGTCTTGCATTGAGGGCAACACTGAGTTCC
ATCTTTCCTCTCGTACTCATAGCAAGGCCGACACACAGGGAAGGCACATTCATTACACGCGACA
AAGACATCTCCAGTTTCAGCGAGTCCAACATCATCACCACAGATCTGACATATCTGGCCATTCA
TATTCTTCAAAGGTTTGGT

Sequences
Splice junction sequence	ATTCATTACACGCGACAAAGACATCTCCAGTTTCAGCGAGTCCAACATCATCACCACAGATCTG ACATATCTGGCCATTCATATTCTTCAAAGGTTTGGTcgtatggccatgggtgagaagaggaatt ggttgagattcatgtctagaggaagaagaaaactcttcgccatggcgttggtgtctcgccttgt tagctccc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 369 Transcript exons: 15645314-15645486,15645585-15645780 CGTATGGCCATGGGTGAGAAGAGGAATTGGTTGAGATTCATGTCTAGAGGAAGAAGAAAACTCT TCGCCATGGCGTTGGTGTCTCGCCTTGTTAGCTCCCTGGGCGTAATTGAACTCATTCTCGATAT CATCAACATCATCCTCATCTTCATCTCCTTCAACACGAGGACTCCCCCTGTGTCGTCTGAATCT AGTCTTGCATTGAGGGCAACACTGAGTTCCATCTTTCCTCTCGTACTCATAGCAAGGCCGACAC ACAGGGAAGGCACATTCATTACACGCGACAAAGACATCTCCAGTTTCAGCGAGTCCAACATCAT CACCACAGATCTGACATATCTGGCCATTCATATTCTTCAAAGGTTTGGT
Genomic sequence	CGTATGGCCATGGGTGAGAAGAGGAATTGGTTGAGATTCATGTCTAGAGGAAGAAGAAAACTCT TCGCCATGGCGTTGGTGTCTCGCCTTGTTAGCTCCCTGGGCGTAATTGAACTCATTCTCGATAT CATCAACATCATCCTCATCTTCATCTCCTTCAACACGAGGACTCCCTGGAAAATTCCAAAAAAT TGTTCAACACAACAGCAAAGAAACAAAAAGAGAAAATCCATATATAGCAATTGCCAACAAAAAG AAAAAGACAACTGACCCCTGTGTCGTCTGAATCTAGTCTTGCATTGAGGGCAACACTGAGTTCC ATCTTTCCTCTCGTACTCATAGCAAGGCCGACACACAGGGAAGGCACATTCATTACACGCGACA AAGACATCTCCAGTTTCAGCGAGTCCAACATCATCACCACAGATCTGACATATCTGGCCATTCA TATTCTTCAAAGGTTTGGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.391547177

Conservation Information
Conserved circRNAs	NA
PMCS	0.391547177

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15645763-15645316(-)
15645317-15645777(+)
						
						Potential amino acid sequence
						
							MNGQICQICGDDVGLAETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRV
EGDEDEDDVDDIENEFNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHTTKPLKNMNGQI
CQICGDDVGLAETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRVEGDED
EDDVDDIENEFNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHTTKPLKNMNGQICQICG
DDVGLAETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRVEGDEDEDDVD
DIENEFNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHTTKPLKNMNGQICQICGDDVGL
AETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRVEGDEDEDDVDDIENE
FNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHT(-)
MAMGEKRNWLRFMSRGRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESS
LALRATLSSIFPLVLIARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFGRMAMGE
KRNWLRFMSRGRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESSLALRA
TLSSIFPLVLIARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFGRMAMGEKRNWL
RFMSRGRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESSLALRATLSSI
FPLVLIARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFGRMAMGEKRNWLRFMSR
GRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESSLALRATLSSIFPLVL
IARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFG(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15645763-15645316(-) 15645317-15645777(+)
Potential amino acid sequence	MNGQICQICGDDVGLAETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRV EGDEDEDDVDDIENEFNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHTTKPLKNMNGQI CQICGDDVGLAETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRVEGDED EDDVDDIENEFNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHTTKPLKNMNGQICQICG DDVGLAETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRVEGDEDEDDVD DIENEFNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHTTKPLKNMNGQICQICGDDVGL AETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRVEGDEDEDDVDDIENE FNYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHGHT(-) MAMGEKRNWLRFMSRGRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESS LALRATLSSIFPLVLIARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFGRMAMGE KRNWLRFMSRGRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESSLALRA TLSSIFPLVLIARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFGRMAMGEKRNWL RFMSRGRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESSLALRATLSSI FPLVLIARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFGRMAMGEKRNWLRFMSR GRRKLFAMALVSRLVSSLGVIELILDIINIILIFISFNTRTPPVSSESSLALRATLSSIFPLVL IARPTHREGTFITRDKDISSFSESNIITTDLTYLAIHILQRFG(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT4G32410_circ_g.21

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