Detail information of BGIOSGA011861_circ_g.8


General Information
CircRNA Name BGIOSGA011861_circ_g.8
ID in PlantcircBase osi_circ_004538
Alias 3:3060765|3064356
Organism Oryza sativa ssp. indica
Position chr3: 3060765-3064356  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011861
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA011861_circ_g.5 BGIOSGA011861_circ_g.6 BGIOSGA011861_circ_g.7 BGIOSGA011861_circ_g.9 BGIOSGA011861_circ_g.10
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA011861-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACAGTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACTATCTCCT
GCCAGAGTCGACAGCTACTTTGAATCTGCTATCCAGatattagcccgtgatggcgaacaaactg
agaaggagaagtggattgatcttgttcaggaggttgcatgcagttcctcagtaaagaggcccaa
agaggtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATTAGCCCGTGATGGCGAACAAACTGAGAAGGAGAAGTGGATTGATCTTGTTCAGGAGGTTG
CATGCAGTTCCTCAGTAAAGAGGCCCAAAGAGGTAACCTCTAGTATTTTCTTACTACTAGTACA
TTCTGAGACCTAGTAGAAAGCATATATTAAGCTATCTTATTACTAGTAAGAGCCTAAGAGGAAA
TCAAGACTAAAGAAAGTACTTTGATTATGAACTTCGCTGTTTACATTCAAATAAAAAAGGCATG
GTTTGGCAGTCAATGATCTTTAGTTTTGATGCATTTGATGTTTTATGAAATCATTGTACTAAAG
TTATTGATAATATTATCATAGGTTTTACCAACTTGCAGCATCTTAAGCAAAGCTCTCAACAAAA
ACCAGAGGGCTGAAAGGGAGGCTGCAGCAGCCGCACTGTCAGAATATATTAGACACAGGTAACA
AATTAGCCTTCAATAAGTCTGTAGATAGAAAAGCAGTGCTGGAACCTTTAGCTTCTGATGCATA
GTTAGAATCTTAGGTCAATTTCCCGTAGGATGTCAGCTAGCTATTGGTGATTACTGGTTTTCTC
TGATTAAGGTTGTTGTTCCCCAAAAAGCAGGGAAGGGAGACCCATAGAAATATAATCCTGTTCT
TTACATTGAAAGCAAATATTCTAGACACTATCATTCTCTGATTCTTAGGTAGATAACATAGAAG
CCGGAATATATAAATGGAACCTGAATGTAACTCTTAATTTTTATTAAGAAAAGGTTAATCCTGC
ATGGGTGGGAATGGAACTGAGAACCTCACACATACGCATCCAAACTCCAGGCCCCTAAACATTT
TTAAGACTTTTGGGCATTCTGGGTTAAAATTTTCCAACTAAGGGCCAAAAGGTACTATTCTCGA
GAAAAACTATGCTCATAAAGTTGTATGCATAGTTTATCTGTTATCCATGGTCAAATTATTTTAG
TTTCAACTAATTCTAGTGAATATGCCCACAATCTGCATTATAATTTGTGAATATGCCCACTACC
TGTATTGGCACATATACACTTTTATCATACATGAACTTGTCGTTCACTTTTTTTTTTGATTTTT
TTTACTGTGCAGTGAAAAAGAACCTATATTGCTTGACCAAATGGTTCTGGAGTTGTGTCAACAT
GTCTCTGATGACTCGCCAACTGTCAGGAGTCTGTGCCTACGTGGACTTGTGCAGGTCATCAATC
TAACCATAGCAATTTTCTTAGGATACATTTTCTCTTCCTTACATATTGTTGGACTCTTTGACTA
ACATAGATGGGTAATATTGTTTGACTAACAATTTTGAAGATGCTTATAATGTTTATCTTTCACA
AATCACAATCATACATCATATTAGCATATTGCCTGTGTGTTGTAACAGAATTTTAAAAAAGACC
CTACTCATCAATCCGTTTTTGCTATCACTTTCTACATATCTCCTCTATTGATAGGTGGGCCATT
TGACCCCAGAGTGTACTGTTTTCTTTTTTCTTCACAAAATGTAGGGAGTTGGTTGGGGGGGGGG
GGGGGCCAGATTCACCACTCACCTCCACCATTTCCTTCTTTCAAAGTAGTATATATTATCTTTA
TGTGCGGAACATATCCTGCATTTCCTTCTCAATCTTGTTTTGTGATGTGCACATTTTTCTTGCT
AGCTGAGTAGTTCATGATTCAATTGATGCCTTTTGTGATATTATTTATTGGGCGCTGAACCTAA
TTTATCTTTTGTATCATCTCTTTCAGATACCTGAGAGCTGTATTCCTAAATACATCCAGCAAGT
CTTAGGGGTAATATTAGCATTACTTGAAGACACCAAGGAGTCTGTTCAATTAACTGCTGTCCAG
TGCTTGTTAACTGTGAGTTCTTCAATTGATTACAATGCAAATTGCCTCCATTTCCATTTATTTT
CCAATTTGACTGAATAATTGAATGCCAATATGCCATGAACCACTTTCAGGTTCTTAATGTGTCA
GAACAAGATGCCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAGGTAA
TCATTTATGACAAGCATACTGACATGCTCGCATGCATTACTGTTTAATGGCATTATGCAGAACG
ATTTGCATTACTTTACCATGCTTATTATGGAACATGTGGGGTGCATGGCTTATGAGTTACAGAG
GGTTACTTTGGAATTTATTTTGCATATGGGATTTTAAGAGACATACTAATTGCAAAGTGCACAT
GTTAGCAAGTTCACTGTCCGGGATATATCCTCGGTAAATTTTGAAGATGTATGCACTGTCTCCA
TGCTGCCTAAGCTCGACATCGTCATGTAGTTGTAATCATCTTTGTACTTTATTTTTCTCCCAAA
GCTTAATGAAATTGGTCGGTCGTCCTTTTGGCCGACCCGGCAAAAATGCACTATCTCATACAGG
AATGTTCAACCCAAATAAATAATGAAATAAATAAATCAAACTCTCATTTTGTGCCAGTGTATTT
TGATCACTTGAACCTTTATATTGCATTATTTCTTTTATCTGTTGGCATTTTCCTCGTGAATTCC
CAGATTTTTTGTTTTAATTTCATTGTTCTTTTCAGTGTTCACCGTAGTGTTTCAATTATTTATC
TCCAAATGTTAGAAGCTGGTGGCAGTAACAAAGCTACGGTTGCAAACTTTTCTGTTGCTTTTTT
TGCTTCAGGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCTTTAAG
TGCCTATGGTGTAGGTTCACAGCAGTTTCTTGAGCAGGTAGTAGCATGCAAAGTCAGCTTTTAG
TGTGTTATTAGCAGTGCGCTGCTATCTTGCAAGCCATCTTATAGGGCACTGCTGTAATGGTTGC
AGGAAGTGCTAAGTAGTTTTGGATTATTTTCTTATGTTATGTGTGTTAATCTGTTAACAAATTC
GTTGCCCCTGTTGCAGATTCATGCCACTCTTCCTCGCTTGATCCTCCATCTTCACGATGATGAC
CTAAGCGTTCGCCTTGCCTGTCGGGTAGGTAGTCATTACAAATCAGACAAATTAATACTTCCTC
CGTTTCACAATATAAGACTTTTTAGCATTGCCCACATTCATTTAAATGTTAATGAATCTAGACA
TATATATGTGTTTAGATTCATTAGCATCTATATGTATGTGGGCAATACGGAGGGAGTACTTTGT
TTTCCCTTGGCTTTGCCTGTTGTGTAGGTATTCTTTACTTATTATTTTGTTTTCCCTTGCTACA
CAGTTGCTTTAACTTGAATTATATTCCCCCCCCCCCCCCCCCCCTCAAAACAGAATACGTTCCA
ACTCCTAGCGCCTTTGATGGAAGTAGATGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACC
TCTGATCGCCGGTTTGTGTTGAACAATTTGCTAGCCATTTCTACTGGGATTTGATATTTTAGTT
ACGAGTGAAATTTTTACTTGTTCTAATGTGCTTTGTCTACAGTTCGGATTATGAGGACTTCATT
AGGGACTTAACAAGGCAACTCTGTCGACTATCTCCTGCCAGAGTCGACAGCTACTTTGAATCTG
CTATCCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 3060833-3064351(-)
3061894-3064353(+)
Potential amino acid sequence MQPPEQDQSTSPSQFVRHHGLISG*(-)
MVLELCQHVSDDSPTVRSLCLRGLVQIPESCIPKYIQQVLGVILALLEDTKESVQLTAVQCLLT
VLNVSEQDAIDPVLINLLVRLRNLQVSMNTKMRSNAFAAYGALSAYGVGSQQFLEQIHATLPRL
ILHLHDDDLSVRLACRNTFQLLAPLMEVDGLSSLLSKKYFTSDRRSDYEDFIRDLTRQLCRLSP
ARVDSYFESAIQILARDGEQTEKEKWIDLVQEVACSSSVKRPKEVLPTCSILSKALNKNQRAER
EAAAAALSEYIRHSEKEPILLDQMVLELCQHVSDDSPTVRSLCLRGLVQIPESCIPKYIQQVLG
VILALLEDTKESVQLTAVQCLLTVLNVSEQDAIDPVLINLLVRLRNLQVSMNTKMRSNAFAAYG
ALSAYGVGSQQFLEQIHATLPRLILHLHDDDLSVRLACRNTFQLLAPLMEVDGLSSLLSKKYFT
SDRRSDYEDFIRDLTRQLCRLSPARVDSYFESAIQILARDGEQTEKEKWIDLVQEVACSSSVKR
PKEVLPTCSILSKALNKNQRAEREAAAAALSEYIRHSEKEPILLDQMVLELCQHVSDDSPTVRS
LCLRGLVQIPESCIPKYIQQVLGVILALLEDTKESVQLTAVQCLLTVLNVSEQDAIDPVLINLL
VRLRNLQVSMNTKMRSNAFAAYGALSAYGVGSQQFLEQIHATLPRLILHLHDDDLSVRLACRNT
FQLLAPLMEVDGLSSLLSKKYFTSDRRSDYEDFIRDLTRQLCRLSPARVDSYFESAIQILARDG
EQTEKEKWIDLVQEVACSSSVKRPKEVLPTCSILSKALNKNQRAEREAAAAALSEYIRHSEKEP
ILLDQMVLELCQHVSDDSPTVRSLCLRGLVQIPESCIPKYIQQVLGVILALLEDTKESVQLTAV
QCLLTVLNVSEQDAIDPVLINLLVRLRNLQVSMNTKMRSNAFAAYGALSAYGVGSQQFLEQIHA
TLPRLILHLHDDDLSVRLACRNTFQLLAPLMEVDGLSSLLSKKYFTSDRRSDYEDFIRDLTRQL
CRLSPARVDSYFESAIQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021