Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA011861_circ_g.8 |
ID in PlantcircBase | osi_circ_004538 |
Alias | 3:3060765|3064356 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 3060765-3064356 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA011861 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA011861_circ_g.5 BGIOSGA011861_circ_g.6 BGIOSGA011861_circ_g.7 BGIOSGA011861_circ_g.9 BGIOSGA011861_circ_g.10 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA011861-TA:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3060833-3064351(-) 3061894-3064353(+) |
Potential amino acid sequence |
MQPPEQDQSTSPSQFVRHHGLISG*(-) MVLELCQHVSDDSPTVRSLCLRGLVQIPESCIPKYIQQVLGVILALLEDTKESVQLTAVQCLLT VLNVSEQDAIDPVLINLLVRLRNLQVSMNTKMRSNAFAAYGALSAYGVGSQQFLEQIHATLPRL ILHLHDDDLSVRLACRNTFQLLAPLMEVDGLSSLLSKKYFTSDRRSDYEDFIRDLTRQLCRLSP ARVDSYFESAIQILARDGEQTEKEKWIDLVQEVACSSSVKRPKEVLPTCSILSKALNKNQRAER EAAAAALSEYIRHSEKEPILLDQMVLELCQHVSDDSPTVRSLCLRGLVQIPESCIPKYIQQVLG VILALLEDTKESVQLTAVQCLLTVLNVSEQDAIDPVLINLLVRLRNLQVSMNTKMRSNAFAAYG ALSAYGVGSQQFLEQIHATLPRLILHLHDDDLSVRLACRNTFQLLAPLMEVDGLSSLLSKKYFT SDRRSDYEDFIRDLTRQLCRLSPARVDSYFESAIQILARDGEQTEKEKWIDLVQEVACSSSVKR PKEVLPTCSILSKALNKNQRAEREAAAAALSEYIRHSEKEPILLDQMVLELCQHVSDDSPTVRS LCLRGLVQIPESCIPKYIQQVLGVILALLEDTKESVQLTAVQCLLTVLNVSEQDAIDPVLINLL VRLRNLQVSMNTKMRSNAFAAYGALSAYGVGSQQFLEQIHATLPRLILHLHDDDLSVRLACRNT FQLLAPLMEVDGLSSLLSKKYFTSDRRSDYEDFIRDLTRQLCRLSPARVDSYFESAIQILARDG EQTEKEKWIDLVQEVACSSSVKRPKEVLPTCSILSKALNKNQRAEREAAAAALSEYIRHSEKEP ILLDQMVLELCQHVSDDSPTVRSLCLRGLVQIPESCIPKYIQQVLGVILALLEDTKESVQLTAV QCLLTVLNVSEQDAIDPVLINLLVRLRNLQVSMNTKMRSNAFAAYGALSAYGVGSQQFLEQIHA TLPRLILHLHDDDLSVRLACRNTFQLLAPLMEVDGLSSLLSKKYFTSDRRSDYEDFIRDLTRQL CRLSPARVDSYFESAIQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |