Detail information of AT2G04520_circ_g.2


General Information
CircRNA Name AT2G04520_circ_g.2
ID in PlantcircBase ath_circ_012789
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1575101-1575198  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI, circRNA_finder
Parent gene AT2G04520
Parent gene annotation OB-fold nucleic acid binding domain-containing protein
Parent gene strand -
Alternative splicing AT2G04520_circ_g.3
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G04520.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTTTGAATATAAGCTCTCTCTTCTCGTCATCTGCTTCGTTCTTTCCTatcttccatttccaa
gcatacgaaggacttgtgcgtattcttgtccatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTTCCATTTCCAAGCATACGAAGGACTTGTGCGTATTCTTGTCCATCTTCTTTGAATATAAG
CTCTCTCTTCTCGTCATCTGCTTCGTTCTTTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.363945916
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017