Detail information of EPlOSAG00000032143_circ_ig.2


General Information
CircRNA Name EPlOSAG00000032143_circ_ig.2
ID in PlantcircBase osa_circ_030526
Alias Os_ciR10842
Organism Oryza sativa
Position chr6: 9187424-9187585  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000032143_circ_ig.1 EPlOSAG00000032143_circ_ig.3 EPlOSAG00000032143_circ_ig.4 EPlOSAG00000032143_circ_ig.5 EPlOSAG00000032143_circ_ig.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACCTCCAAACTTTAACGCATCAGATTCGAGCAGGTGGTTTGGAATCCTGATTGACAAGCATT
TTCCACTAGGGGAACCAcgcaagctggccacattgacacccgcaagatgttcagtgaaatggca
tggtccgcacaagcactttgatgtcaatccatgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCAAGCTGGCCACATTGACACCCGCAAGATGTTCAGTGAAATGGCATGGTCCGCACAAGCACT
TTGATGTCAATCCATGGCCACCTCCAAACTTTAACGCATCAGATTCGAGCAGGTGGTTTGGAAT
CCTGATTGACAAGCATTTTCCACTAGGGGAACCA
Conservation Information
Conserved circRNAs NA
PMCS 0.304135802
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015