Detail information of Os06g0160700_circ_g.1


General Information
CircRNA Name Os06g0160700_circ_g.1
ID in PlantcircBase osa_circ_042265
Alias NA
Organism Oryza sativa
Position chr6: 3080790-3080829  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0160700
Parent gene annotation Starch synthase, Starch biosynthesis (Os06t0160700-01)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0160700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGTGGCGAGAATGCCCACccacagcattttttcaatgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 40
Transcript exons: 3080790-3080829
CCACAGCATTTTTTCAATGGTTAGTGGCGAGAATGCCCAC

Genomic sequence CCACAGCATTTTTTCAATGGTTAGTGGCGAGAATGCCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential Y
Potential coding position 3080823-3080810(+)
Potential amino acid sequence MPTHSIFSMVSGENAHPQHFFNG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study