Detail information of Os03g0762300_circ_ag.1


General Information
CircRNA Name Os03g0762300_circ_ag.1
ID in PlantcircBase osa_circ_021999
Alias NA
Organism Oryza sativa
Position chr3: 31526812-31531120  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0762300_circ_g.1 Os03g0762300_circ_g.2 Os03g0762300_circ_ag.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-GC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCCCGACGTCGAGACCATCGTGCGCGACGCGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGC
CGTCGGCGCCACCGTCCGCCTCTTCTTCCACGACTGagctcggcgcgtccgacctgaggacgga
ctactacaacagcacgtgccccaacgtcgagagcatcgtgctcggcgtggtgaaggacaagatg
caggccac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 145
Transcript exons: 31526812-31531120
AGCTCGGCGCGTCCGACCTGAGGACGGACTACTACAACAGCACGTGCCCCAACGTCGAGAGCAT
CGTGCTCGGCGTGGTGAAGGACAAGATGCAGGCCACCATCCGCACCATCGGCTCCACCGTCCGC
CTCTTCTTCCACGACTG

Genomic sequence AGCTCGGCGCGTCCGACCTGAGGACGGACTACTACAACAGCACGTGCCCCAACGTCGAGAGCAT
CGTGCTCGGCGTGGTGAAGGACAAGATGCAGGCCACCATCCGCACCATCGGCTCCACCGTCCGC
CTCTTCTTCCACGACTGCTTCGTCGATGTACAAACACTTTGCTTGATTGATTAATCGGCGATGT
GTCAAGCATGGCGATCTCGATTGACTGACGTCGTGTGTGCGGCGTGGCGTGGCGTGGCGTGCAG
GGGTGTGACGGCTCGGTGCTGATCACGTCGACGGCGGGCAACACGGCGGAGAGGGACGCGCCCG
ACAACCTCTCGCTGGCGTTCGAGGGATTCGAGACGGTGAGGAGCGCCAAGGCCGCCGTCGAGGC
CGCGTGCCCCGACCAGGTCTCCTGCACCGACGTGCTCGCCATCGCCACGCGCGACGCCATCGCC
CTGGTACGCTACGCGCTACACCAACTCGCACACGCTCTAGAAGTAACCGGTGATGCCAAACACT
GCAAGATTCGTGCAGAGCGGTGGGCCATTCTTCCCGGTGGAGCTGGGCAGGCTGGACGGCATGA
GGTCCAGCGCCAGCAACGTCGCCGGCAAGCTGCCGCAGCCGAACAACACCCTCAGCGAGCTCGT
CGCCATCTTCAAATCCAACGGCCTCAACATGTCTGACATGGTCGCGCTCTCAGGTGCGACATAG
ACACACACTATACTATACAAACCAATGCATCCCCCGCCATGTGTTCGACGCAATGACTGACCGG
ACTCGGTGTACGCATGCAGCGGCGCACAGCGTCGGGCTGGCGCACTGCAGCAAGTTCTCGGACC
GGCTGTACCGCTACAACCCGCCGTCGCAGCCGACGGACCCGACGCTGAACGAGAAGTACGCGGC
GTTCCTCAAGGGCAAGTGCCCCGACGGCGGGCCGGACATGATGGTGCTCATGGACCAGGCCACG
CCGGCGCTCTTCGACAACCAGTACTACCGGAACCTGCAGGACGGCGGCGGCTTGCTCGCCTCCG
ACGAGCTGCTCTACACCGACAACCGCACGCGGCCGACGGTGGACTCGCTGGCGGCCAGCACGCC
GGACTTCTACAAGGCCTTCGCCGACGCCATCGTCAAGCTCGGCCGCGTCGGGGTCAAGTCCGGC
GGCAAGGGCAACATCCGGAAGCAGTGTGACGTCTTCAACTGAGAAAAATGGCACTACGACGGCG
ACGACTACGGACCATTTGTAGATTGTGTATACACGATCGATTGAAAATGTGTGTGTTGACACGT
ATATAAATTGCAAAGGAGTGATTCGTTGGGTTTGCCAGTTTTCTGTTTGTACATCGATCGATCG
GTCTTGTTCAATTCGTTGTGTTAAAATATGTGTGTTTCTGCACATAATTTGGATTCAATGAAGT
AATAAGTGAATAAATACTACACTATCAACAAAAGACAGATTTTGATGTGTGATGACAGGATTAA
TCTAGAACAGTTGCTTGGATGGAACTGCAGAGCAGTTAGTGATGAATTGCTTATGTTCTCAATC
TCAAGCCGCAACATTCCTCTGACGAATTCGTGTACAATCAATCATCATATTCTTGATATTTCCG
ATAAATTATTGGTGAGACTGAATTCGTCAATCTACGGATCAATTATTGGGCCAGAAGTCGACTT
AAGGGCTAAGGCACGGCACTACTCTGTCATGGTGATGGTGGGTAACAGTCTGAAAAAAAAAAAC
AGTCTGAAGAAAGTGAAAACTCCCAATATAATTCCCCTGCCATCTAGTCTTCTATCAAGTCCAC
TGAATACTAGTAGTACTCAAAACTTCCATCCTTCCATTCTTAGTTTCTTACCACAGCAAGCCTG
ATTAATTTCAGAACAAATACCCAATGACATCCCCCAAAACTTGTCCCTTCAATTATGCAATTGT
CATTTATATATATATATTTTAAAAAAACAGAGCCAACCTTGACGGTTTCAGTATTTCAGACAAC
GAACGACATGACCAACAGACCAGTACAGCTAGGCGACGTTTTAACGTGAAAAAAAACTTTAAAA
CGATGTGATCTTTTTTTTTCAAGTAAACGACGCACGCGCGTCTCGCAGAAAAAGTGTACTAACA
CAAATCCTTCGGTGCCGTGTCATACATGGCGCTTCCCCCCAACTCCAAGTCCACCACCGCCAGG
GCAAAATCTCTGAAGCCGCCCCGTGCGAATGGCCAAATATTACGGTGATTTGCTACGCCTAGGT
ACGTACGCGCGCGTCCCCCTGCAACCGCCGAGGAATTGACGTCCCAACCAAACCCAGCAAAGTC
GCCTCGCTCCGTTTCATTGTTTTCGTTATCTTTGTCCCGTGCCGGATAACTTCCACGGCCACAT
CGATGTAACGATCAGAATCCGTGACGTCTACTACTGTCCAAAACTGTATTCGAGTTTCATATGC
ACTTCCGATTGATCGGCAGCCCAAACTGTTGCTGTTACATGAGTATGAGTGTTTGATTTGTTTT
GCATGTCGTTTTCGTTTGATATGATATGTTTTCTTTGGACTTTTCTTTGTAAGGACTCAGGATG
TCACGCTGAAAAAAACCCGTGTGGAAAACCGTGGGCCGGCGGCCCATCTACAGTGGGAGATTTG
CAAAACGTTGATGATATGATGGAGAAAGGAAACGGCCTAAAAAGCATTGAGCCGTTAGTGGGGG
CGCGCCGGGGGGGGGGGGGGGTCGGAATAGAATGTGTGACGTCGTTCTCACAGATCAAGACGAT
GTCATTTCTGTACATCAAAGGTCCTTTTTAATCCACATTGCGTGGGTTACTCAGCTAATGGAAC
ATCATCATGTTCCTGGAGGAAGTGTGCAAATCAAGCTGATAATTAGCAGATCATAGCTGCCTAG
TGGTAACATTTTCTGAAGAAACAGAGCAACTCTTTGATGAGGCGAAACGCTGATGGGTACAGAC
GTACAGTACACACAACGACACCAATTATACGTGCCTCCTTTTCGGATGCCTACTACTACTTGTA
ATTGTCAATCCAGAATTGTGACGCCGGTAGGAGTACGTGTTAGAGAAGAGTAGCTGGGCCTCGC
CGTCTGCAATAATACAAACCTGCTCCGGGACGCACGACGAACCTACGAACAACTCACCATTCTT
GGCCGCATTTGCCTTTCCAGAGGGGCAGCAGCACACAGAAGCTACCATCCGCTGCATCGAGTGT
CGCGTCGGCTAATCGGAGTGTACAGTTGTGCACGAAACTGCAATGTGCGCTTTGACCGGTGCTG
GCCGGCTACATTGCGTGGTACATGTGCCTTCATCATCAGTTCATCACATGCGTATCTTCAGCCT
CGTTAATTTCCATGTTACTAGTATTTCAAAGTTCAGATCAAGTGCTCCTAGAGCTTGCATTTTA
AACAGGTTACCAGATCAGTCCCAATGTACAAAACAGTACGCTTAAATTTAACCGTAAATCTACA
CAAAAATAGCTCTAATCACACACGAAATCTAACTAAACTCGCTGCAATTAAGAGCTGCCGCTGC
TCGTGCCGTTCTTGCTGCTGCTGCTGCCTGCAGGAACCGGAAGTTTTTAATGCGCGGAGCATAT
GCAGCTACGCACCAACCGCGCCATGTGCGGGGCGGGGCGGCCGTGCTTACACATGTTGGCAACG
CACGCGACGCGACGCGAGCGCCCCTCCCCGGACAGCCGTATCCCTCCCCGTCTACCACACGCCC
GTGGCCGCGACCGCGAGAGCCCAAGCCGCCCCCGGATAGAACACGCGCATGTGGGCGAGACGTG
GGGGCCAGCACGTCGCTTCTAGATCCCCCTCTCCGCTCGCCGCGGCCGTGGTCCGTGGACATGG
CATGCATCCACCGCACCGCGCCGCGCCGCGCACGCACGCATCTCGGCGCGCGCCGCCACGCTAA
CTACCCCGGGCGACGCGAGTCAGTCCATCCCCTCACCTTCCCCCACTCCGAGGAGACTTGGAGT
CTACATCACTCGACCATAACTACGCTACCAGCCACTGCGCACGCACGACTCGCACACGCTCCTC
GTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCG
CGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCC
GGGAGCGGCGTCGTGGCGCAGCTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGA
CCATCGTGCGCGACGCGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCGCCACCGT
CCGCCTCTTCTTCCACGACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.121101315
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016