Detail information of AT1G66430_circ_g.1


General Information
CircRNA Name AT1G66430_circ_g.1
ID in PlantcircBase ath_circ_008930
Alias NA
Organism Arabidpsis thaliana
Position chr1: 24778770-24778972  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT1G66430
Parent gene annotation Probable fructokinase-6, chloroplastic
Parent gene strand +
Alternative splicing NA
Support reads 36
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G66430.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCGATGCACCGGCTTTTAAAAAAGCTCCAGGTGGTGCACCTGCTAATGTAGCTGTTGGTATT
GCTCGTCTTGGTGGTTCTTCAGCTTTCATTGGAAAGgaagagcattgtctagtgatggttcaac
acaagaatctccttatgtagtctgttttggagaaatgctaatcgattttgtaccgacgacaagc
ggactttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGAGCATTGTCTAGTGATGGTTCAACACAAGAATCTCCTTATGTAGTCTGTTTTGGAGAAAT
GCTAATCGATTTTGTACCGACGACAAGCGGACTTTCATTAGCCGATGCACCGGCTTTTAAAAAA
GCTCCAGGTGGTGCACCTGCTAATGTAGCTGTTGGTATTGCTCGTCTTGGTGGTTCTTCAGCTT
TCATTGGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.320116316
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017