Detail information of BGIOSGA034372_circ_g.5


General Information
CircRNA Name BGIOSGA034372_circ_g.5
ID in PlantcircBase osi_circ_009333
Alias Chr11:4504383_4505168(MH63RS2), Chr11:4556424_4557209(ZS97RS2), Chr11:4504383_4505168(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4232119-4232905  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA034372
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034372-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTTGCACCTTCAAAGGTATCCTGTCCAGACGCTTGACCCTTTATATTTGGTATAACAAGGTT
TTTCTGTTTTGCTTTCCTGAGTAGCTGTGAGAGGACccttttgcacatctggtttcacaaatgt
ttcaccagatggggttttgttgacactttcaggaggcaggttgagtttgcgggcatcctcaggg
gggacctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTGCACATCTGGTTTCACAAATGTTTCACCAGATGGGGTTTTGTTGACACTTTCAGGAGG
CAGGTTGAGTTTGCGGGCATCCTCAGGGGGGACCTTCAAACAGTAAACATGAGCTTTGTGAATA
CCCAATAATATCAGAGAACAAATGTTTCTGCTGTATGTAGTAGGTATTATAATCAGAAATTAAG
AAACTAATTTTTACCAAAGTACAGTAGCATAGGTTATATGCCATCATGATGGATGGATACAACG
AAGCAAAGTCCAAAGTCGCAATGGGTTTCTCATAAAATCCAGCCCTTGCCTCCAAAACCTAAAA
AAATGAAGGAAGGCATAAATTGATATAAGATAAATAATAACTGGACAACAGAAGGAATGTAGCT
AGAATGCTCATTGCACGACCATTAGAAACATGACAAAGAAACAGAAAGTGAGCAGGTACGGAAA
TATATTTTTCTCAACAGAACCCTCAAAGCATTCCTTTTTTGCCTTATTTTGGATAAAGAAAGCT
TTATTGATCTCAGATCATTACACCAAGGTAATACAACTGATCTAAGACCACTCGCAGCCTAGTT
TTTTTTTTTGCATGAATTCTGATTTCTTAGTAAATACAGTAGTTGTATCATTACATGCCAGCAA
GCAACCAATGATGAACTAGAAACACACAAATCATGTCCATTGACTTACAGTTGCACCTTCAAAG
GTATCCTGTCCAGACGCTTGACCCTTTATATTTGGTATAACAAGGTTTTTCTGTTTTGCTTTCC
TGAGTAGCTGTGAGAGGAC
Conservation Information
Conserved circRNAs osa_circ_008737
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021