Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037981_circ_g.1 |
ID in PlantcircBase | zma_circ_009089 |
Alias | Zm06circ00077 |
Organism | Zea mays |
Position | chr6: 144111861-144112816 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d037981 |
Parent gene annotation |
Anaphase-promoting complex subunit 1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037981_T001:4 Zm00001d037981_T002:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.179569253 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
144112643-144111942(+) 144112645-144111863(-) 144111885-144112752(-) |
Potential amino acid sequence |
MAVCSVNKVYVVAKVKAPRPKGKAVVLCAKFHNCCCERYPYASVTVRTLRCSCKPNARSKPA*( +) MHQLFSPVSVLLPSLQVLVFPKLVLAGRLPAQQNATVNLDLSSRSVSEFKSWAEFHNGVAAGLR LAPFQEKMLRTWIQYNRPSEPNFTHAGLLLAFGLHEHLRVLTVTDAYGYLSQQQLWNFAQRTTA LPFGRGAFTLATTYTLLTEQTAMHQLFSPVSVLLPSLQVLVFPKLVLAGRLPAQQNATVNLDLS SRSVSEFKSWAEFHNGVAAGLRLAPFQEKMLRTWIQYNRPSEPNFTHAGLLLAFGLHEHLRVLT VTDAYGYLSQQQLWNFAQRTTALPFGRGAFTLATTYTLLTEQTAMHQLFSPVSVLLPSLQVLVF PKLVLAGRLPAQQNATVNLDLSSRSVSEFKSWAEFHNGVAAGLRLAPFQEKMLRTWIQYNRPSE PNFTHAGLLLAFGLHEHLRVLTVTDAYGYLSQQQLWNFAQRTTALPFGRGAFTLATTYTLLTEQ TAMHQLFSPVSVLLPSLQVLVFPKLVLAGRLPAQQNATVNLDLSSRSVSEFKSWAEFHNGVAAG LRLAPFQEKMLRTWIQYNRPSEPNFTHAGLLLAFGLHEHLRVLTVTDAYGYLSQ(-) MHMDISHSNNYGILHKGQLLYLLGVELLL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |