Detail information of Csa2G356660_circ_g.2


General Information
CircRNA Name Csa2G356660_circ_g.2
ID in PlantcircBase csa_circ_001146
Alias Chr2:16753132_16758085
Organism Cucumis sativus
Position chrChr2: 16753132-16758085  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ei-circRNA
Identification method Find_circ
Parent gene Csa2G356660
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa2G356660_circ_g.1 Csa2G356660_circ_g.3 Csa2G356660_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Csa2G356660.2:2
Csa2G356660.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGATGCCAGGTTACCGGCAAACCATTTCCAGTAACCATCCCTGTCTTTCTTGAAGTTGAAAAG
TCTCTTGAAGTAATCCTTAAAAGCAAAGTTCAATGCttgagtggggaaataacggatgacattg
gcagtgtttcctctccacaatgaaccgaaaccctcctcttgcattgtgcgcttaaaacaatcac
caataccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAGTGGGGAAATAACGGATGACATTGGCAGTGTTTCCTCTCCACAATGAACCGAAACCCTCC
TCTTGCATTGTGCGCTTAAAACAATCACCAATACCCTTGTATGGCTCAGACAAACGTCCAGATT
TAATCATCTCATCTTGATTTTGAATTAAGAGTTTGACACGCTCAATGGGGGCAGCAGCTGTCTT
GGACACAGCAGCAGACACACCACCCATAAGAAAGTCAAGCATAAAGTTTCCTTTCTCAGCAGGG
GCAGCAACAAAAATGGGGGAAGCGGTTGAGGCAACCCTAGAAAGATCAGTTGTAGCTACACAGG
ATTGCACAGCAGGATATTGAAAAGCAACATTGGAATAATTGGTAATCGGTGCACGTCTCTGATA
GAGTGCAGGATTTCTAAAGCCATCATCACAAGCCCGGAAACCCGAAGCAACCCTCGACTGAAGG
GAGAGCTGACCAGCAACCTTCTGATAGATAGTGGGATGTTGAACCTGATCAGCCATGGCTACTT
CTTCCCTGCAATAATTCCCAATGATTTCATCAGATGAGAAATACTCGTTTCAAATTTAGAACAA
GAGATGACATTGAGACACCAATACGACAGTAGTGGGCCAGAAGTACAGTTTAGGTAAGGCAGAT
AGCTATTCAAGGAAAATGAGATCAATAAAGAATCGAAGAACAAAGTTAATATTTTATAAGCATC
GTTCAATGTAGCAAATCAAGTACTATAAGTCTTCGTTGAAAACAGAGCTGTAATAACAAATGCC
AAGGGTTGAAAAGTAGCAACATGGTCAAGAGTAAAGATCATTTACTAAAACATATAAACCTTAA
TTCTGTTTTATGAAATATCTAATCGCAATAACAATAACATAAGAAAAAAAAACGTACACAAACA
CACCAATTTAAGGGTCGGCTCCAAACACTTAAAAGTAAAGAGTAAATGCATCCGTAAGAGCGCA
GATTCATAACAAAAAATTCGCTGATCCACAGTAAAACAATAGGAGACAACCAGTACGATAAGAG
GTCTCATCAGTCATCGCTAAGAGGCCACACAGTCAGTACATGATGATAATATGCGAGTTTTATA
AAAATACAACAAATGAGATTAGATCGGAAAAAATGGGAACACAACAAACCCAAACAGAAACTAG
AAAATTCACATCAAAGATTCCGTTCAGAAACTTCAACAGCAGAACTTCGGAAATAGTTAAGGTG
AACAGTAAACACTATAAGAGATATATTTAGGAAGAACAGATCTCAATCTAGAAGTAAATATGAG
AAAACCAACAGACAAATCCGACAATCTGAAGTCTGTGCGATCAGAAATTTAAGAAATAGCCAAG
GATCAGACCCCAGAAGTTTAAAAAATAAAAAATAAAAAAGGAAGCAGAATAAAGACGAATAAGG
ATCGTTTTTACCAAAGACGAACCGAGAAGAAAGTGAAAGTATGAAGAACTGCCGGATCTGAAGG
TGAAATTGAAAGTGATCGGTAGAAGAATTGTGGATCTAAAAGAGAGAAAGAGGAGTATACCTTA
GGAGAAAACTGATGGCCGCGAGGGAAACTGGGAGGAGTCTGCCGCGGCTACAATGTCGCGTAGG
ACGAATGCGAAAACTTCAGGAGAAGAGAGGGTTTCCCGCTGCACCATGGGTCAGTATTAAGGGT
TTAAAATGGGCCCTTATTGGGCCTTTATTACCAAAGCCTTTACCATAAGATTTTATGTTCTCCT
TTATTTTTAAAAAATCATATTTAAAATAATTACAAATATAAACCAATATTAATGTTACAAATCT
ATTATTAATAAACAAATATTCACTCATACATAAATTCTACCAAAATATAAATCTATCACTAATA
CATGCAAAACATAATAAAAATAAAAAATTTAGTGTGTTATTACTCAATAACTTCTTGAACATGT
TTTTATTTTTCAAGGTTAGATGGAAGGTTTAAACTTGAATTTTAATTCTTCACATGTCACTTGG
ACATAGCACTAGAAATAAACTAAAAATTATTGACATAGATATTGATTTTATTCATTAATTAGTG
TTGACACATTATTGTGTTTACGTGTCTGATTTTATTGATAAAGTATTATTAATAAAAAATGGTA
CAAACTTTCATTAACGACTTAGTATAAAGTTGAGAAAATTGAAAAATGGAAGGCCAAATTGATA
ATTAACTACAAAATTAAGGTTTATATTATATACTTTAAATAATAACAACAATAACAAAGTTGAA
TAAAATCGTGCTCACTTCTGCACGCCTTTTTTCTTTTTTTATTTTTTATATATTGGTCATAGAT
TAAACGAAAAGGCATTTCTATAACTAGCCATATGTTAAATTACAATATTAACAACTAGTGTCAT
AATCCATAATTTAATCAATATATAGTATGTGTTTTCATTATACATAAAAAGGCATTATCAGTTA
AACTATAAAATATGTTAAGTTACAATATCAATCTCTAATTTTGTGTTAAGTTACAATATCAATC
TCTAATTTTGGTTATTGGTATAATAAATTACCATTGAGATCTCTAAAATTTTGAAACATTTAAT
ATGTTTATGAGCTTTTAATTTCATAACAGTAATGTATTTTTTTTCTAATTACACCAAATACGTA
TGACTCGTTAGACACCAGTTTTAAACTTTTTTTTTCTTTTTACTTTTTGCTTTTCTGTATAGAC
ATTCACTTTGGACAATATCCATCCCTTTAGTTTCGCCCTCTCTCCCATCATCACTGCTCTTCCA
TTACACAAACAAACAAACATGAAAGCGAAATTACATATCCATCTTTATTTTGAAATTTGGGCAT
CACATTCCTCGGAGTAGGTGCAAGACGGACTCAACCCAACTCTAACAGATGCTGGAATTCCTTC
GGCCCTTCATCGATTTTCCTCGCAAAAAAGTTGTCTTCATTTGCATTAGAGAGGCCTCCAGCTT
AGACCGTGTACAATTCTCACTCCATCCTCATCCAATCCTTCTTAACTGCCACTTTGTTCCAATA
TTTTCCCATTATGTTTGGGTATTGTTTTGTAATTGAATGTTAAGCAATATGATTCATGATTTAG
GGGAAAATATACATTTTTGTCTCTCGCTTTAGATTGAAATACATATATGATTTAGTTATGATTT
TTGGAAGAAAAATAGGACACGGCAGAGAGTTTTATTCAATGTGACATAAAAGGGTTCTCATGGG
CCGCTGATGAACTATAAAGCATATGTTTGGTATGAAAGTCAGAATTTAGGCGAGAATTTGAGGG
GTTTGGCCACTTATTTGATGTGTTCATTGTAGAGCTTGAATGGTCTATTTTGTGCAAATTTGAC
TTTTATTCAAGTGGTGGCCGGTGGGTTGTTGAAGTTCTTATATATTATTTCTTTTGAAGTTCCA
ACTAAGTGGGCGAATTAGAAAATTCTGAATAAAATATAAATATTAGTACACTTGAACTATTCAT
GTTGCCAAATTTAGTGGTGAGAATGGATTAGTTGATTCGAACATTTATTTACATACATAATAAT
GTTACTTACCAGATTTATACATCTTTTTCGACGTGTTTGAGGATTGTGAAAATGGAATAGAGCT
AGAGAATAACAAGGCAAACACAATACTTGTTTGAATGAAAAAAATCAATCATTTGTGCATCTAA
ATCATATATCTTTGCATTCATTTGCTAACAATTGTTACGTAAAATGCTAATTCTTGATCTCCTC
ATGCGTACTGAAAGCTGAATAAACTTTGTTGTATGGCTATTCTAAGAACTAAAAAAACAGAGTT
AAAAGATTTAAAGGTAGATTGGTTTGATTTTGGAATTTCTAGATCGTAAAACATTCCGTCTACT
ACAAGCCCCCAGATGAACATCCTCAGTTGTAAAGTAAGTGAAAGTTTCACTTAAATAAACAGAA
TACAATTAAATCAAAATATCTGAGAAATTATTTTGAGATTCTAATGGGTGATCCCAATGTGAAA
CACTTCTAAAAGCTCTGCATCTCAGTCGAAAACTAAAGTATAGCCTTTTAATAACTGAAAAGTT
TGGGAATTACTCCCTTCAAAACTAAATTATTGAAGGAAAAAAAATGGCCGGAACAAAGTCCAAA
ACTCTGGAGACATTTTCATCAACATCTGAAAAATGAATAAACCTTTAAGGTGAGGTTAACTACC
TCAGCTTATGCGCCACCAGATCCGTATTTCTTCCCGAAGACGATCACCTGCAACTTATCGTAAC
CGGCAAGCACACCAGCACCAGCAACGGCACGGAGAATGTTAGCACCAGCACCCTTGAAGAGAGA
CTTGGCACCTTCGTTCTTCAAGATCTGAGAGAAGGCATCCATTGAGCTCTTGTACTTCACTGCT
TCACCAGACGTCATCATCATTCTTCTACGAACAGTGTCAATTGGGTAGGATGCGAGACCGGCAC
CATTGGTGATGAGCCAACCAAGGGCAAAGCTAGCGAAGAAACTATCCTGCTCTCACATAAAAGG
TAGAATATAATCAGAACATAGCAATTCAAACATTGGCATCCACTGATGAACCCAATTTATATAA
TCCCCACAGCAAACAACTAACACCACTAGCAAACTGACCTGCATCTTCCCGGTCAACAAAACAG
GCTTTAGAGAATCGTACATTCCGAAGTATAAACCTCGGTACACGATGATACCAACGCAAGAAAT
GTTAAACCCACGATATAGACCAGCAACACCATCAGACTGCAATGTCTTCCTGTAGACATCAACC
AGTCCATTGAATTGCCTTTCTCCACCCTTCTTGGCAGCTTTGGCATCATTTGCCAATCGGGTAC
GAGCATAGTCAAGAGAGTAAACAAAAAGAAGAGATGAAGCACCAGCTGCACCACCGGATGCCAG
GTTACCGGCAAACCATTTCCAGTAACCATCCCTGTCTTTCTTGAAGTTGAAAAGTCTCTTGAAG
TAATCCTTAAAAGCAAAGTTCAATGC
Conservation Information
Conserved circRNAs NA
PMCS 1.135974785
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References He et al., 2020