Detail information of Os02g0674800_circ_g.2


General Information
CircRNA Name Os02g0674800_circ_g.2
ID in PlantcircBase osa_circ_015956
Alias Os_ciR7976
Organism Oryza sativa
Position chr2: 27490200-27490725  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os02g0674800
Parent gene annotation Similar to OCL1 homeobox protein. (Os02t0674800-01)
Parent gene strand -
Alternative splicing Os02g0674800_circ_g.1 Os02g0674800_circ_g.3 Os02g0674800_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0674800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCAACGCCTGGCGCCAAAGGCGAGACCAGACCGAAGGAGTGGACGGTAGAGCTGGTGCACTGA
TGCCTCATCGTATTCCGTATGCTCAACCCATGTGACcggtcgcaccatccagcttgctccattc
acgtgcagacgatgcgctcaccccagcacagaagttctccgtcatccggcgtgccagcttcagc
atgcttcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGTCGCACCATCCAGCTTGCTCCATTCACGTGCAGACGATGCGCTCACCCCAGCACAGAAGTT
CTCCGTCATCCGGCGTGCCAGCTTCAGCATGCTTCGCTTGCCCTCTTGCGATATAGCTGCATGC
ATCAAATGCAACACGTAATTATCAGTATTCCAAGCCAAGATATCTGTCCTACAACTGCACTGGC
CATTCTACTCGAACAATGGAGATATTCTTTCAGTTTGTCCTGTTTGAATGACGTCAACCGAAAT
GAATTCCATGCAAAATTTGCGCACAGTTGATTCCGCAAATTGAGCTCGTTTTAGATGGAAAATG
GCAAGTAGAGGTTCAGAATTTCCTGTACCAGTCGAGTCATTTGCTGTCACTGTAGCAGAGGACA
TGAGGATGGCAAGGCATTCGCATTGGCGCTGCAGCGTCGCAAGCCAACGCCTGGCGCCAAAGGC
GAGACCAGACCGAAGGAGTGGACGGTAGAGCTGGTGCACTGATGCCTCATCGTATTCCGTATGC
TCAACCCATGTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.283155101
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015