Detail information of BGIOSGA033494_circ_g.1


General Information
CircRNA Name BGIOSGA033494_circ_g.1
ID in PlantcircBase osi_circ_008744
Alias Chr10:24801897_24802729(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21974625-21975457  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA033494
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA033494-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTATCAAGGATTTCTACACAAACCTCGGTGCACCAGAAGCTTGAGATGTGCATAGAAATTAT
TGAGATTTCTGATCATCAACTTTCTTGTGCAAATATggtacaaaattccttgctataaaatgaa
tcttgtgcttctttggattcagtaccatcatcttgtttggaatagagctgtttattcagtcatg
aatatagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTACAAAATTCCTTGCTATAAAATGAATCTTGTGCTTCTTTGGATTCAGTACCATCATCTTGT
TTGGAATAGAGCTGTTTATTCAGTCATGAATATAGGTAATCTAAAAGAATTTTTTTTGACAGTT
TGTTTGTTGGGAAACTAAAAATGCCATGCTACCTTGTTTGATTTCTTCCAATAACCTGTATTAA
GTTTACTTTGCTAGATATCTCTACCTACTAATTCTATAGAAGTGGAATTCAGTTAGCAACACAC
ATGTTAAAGTAAGTTTTATGACTTCTGTTTCCTGCCATAAAAGGGTACACTATGCATGCCTGAA
TTGACAAGCCGCTAATTTTGTCTTTGATGGTCGTACATCAACTCAACGTCAGAGATTTCCGTTC
CTTTTAATCAAAAAGGTTTTCTAGTTCATCAACCAAGTTACTATTAGATGCTACTTATAGGCTT
GAACAGTATGGAATATGCAGTTTCTATTAGATGCTAGGATTGAACAATATGGATTATGCAGTTT
CTATTAGATGCTACTTCTAGGCTTGAACAATATGGAATAGCTGGGGGAGGGGCCGAGGGGGACC
TTTCCTGGTTAGGCATAGATATGATTCTCGCTAGCTAAAATCTGCACAACTCGCTAGCTCAAAT
CTTGTAGGATCCAAAATGTGTATCCATAGATCTGAAGACACATAACAAGGAGGATTATAGACTT
GTACAAATATTTCTGCTTGTTGAACCTGTATTTATCAAGGATTTCTACACAAACCTCGGTGCAC
CAGAAGCTTGAGATGTGCATAGAAATTATTGAGATTTCTGATCATCAACTTTCTTGTGCAAATA
T
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021