Plant Circular RNA Database

Detail information of Os06g0692800_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0692800_circ_g.2
					
						ID in PlantcircBase
						osa_circ_032143
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 28911924-28913983  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0692800						
					
						Parent gene annotation
						
							Protein of unknown function DUF547 domain containing protein. (O
s06t0692800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0692800_circ_g.3 Os06g0692800_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0692800-01:6

General Information
CircRNA Name	Os06g0692800_circ_g.2
ID in PlantcircBase	osa_circ_032143
Alias	NA
Organism	Oryza sativa
Position	chr6: 28911924-28913983 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0692800
Parent gene annotation	Protein of unknown function DUF547 domain containing protein. (O s06t0692800-01)
Parent gene strand	-
Alternative splicing	Os06g0692800_circ_g.3 Os06g0692800_circ_g.4
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0692800-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAGAAAAGCACTCACTTCTTGCTCGAGCTCCGATCTGTACCGCCGCATCCTTACCCTTCTGCT
TCCATCCCTCTTGCCAGTGCCATTGCTACTATCATCatgcattatcaacgtattgtacaggtta
atccaaaatgctaaccgctcagcacaggtcatacatgtagggtcaacctttgatagttgctcca
cgagattc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATGCATTATCAACGTATTGTACAGGTTAATCCAAAATGCTAACCGCTCAGCACAGGTCATACAT
GTAGGGTCAACCTTTGATAGTTGCTCCACGAGATTCCTGCAGACGAGAGTAACTTAAACAATTA
ATAGCAATCGTATCAAAGTCATGTATAATATAATGTCCATCATTTATTCATAAACGTAATACCA
AGCAGTGCTACTTTGCACTACAAGGTAGAAACAAACACTGAAGAATTTTTTGTTATAACTGAAT
CTTCCGCTGTAGCATTTTTCTCGCATGCTTAATTATTGTTATACTTTTGCTTCTGTAAATTGGT
CTAGGCTATTTATTTAGACATGAAATGAAATCCATTAGTGTTGATAGCTACAGATAGAGTTTAA
TAAGGAAACCTGAAATTTTTTAGAGCTTCAGATGCATATGCAAGCTGTTCCTTGCCAACATACA
TCCAAGACACCTCAGCTACTGAACAATAGTTCCCAATGTCTCTTCGAACTTCCTTGCCATTAAC
GTTGTAGGGATCGAAGTATCTAACTTCATCAATACTGTCATGGTTTGAATCAACTGAAGGGCTT
TGCATCACTGATGCCATCAAGGATGAATCTGATACAGATGTCAATGTACAGCCAGATAGACGTT
CTGTTGATGAAATTGAATTAACAGAAGACCCTTTTGGTGATATCTCGGATGATGAGTCAGATAA
ACGAAGGAAGATATCTCTCATACAGCGCACCATTTCTTCAGAGAGCTTATTTGGATTGCCATTC
CACACATTACCATTGATGCTGCTTTTCCTCTGATGAGATTGGTCAAATGATAACGCATCTATTA
TCTGATATTCTCTGCCTCCATTTTCCATAGGATAGGACTCTTGCATCTGCCAAGAAACAAGCTA
AAATTTACTTTTTGATAACTTAAAATATTTTGATAAAGCATAAATTCATGTTTGCCTAATACTG
ATAAATATAAACCTCTTCGTTCCAGTGTTTTTCCAACAATCTATTTGAAGGAACATCTTGATGC
TCTTCGAGAAGCCCATCTTGAGATACTATCTCTCTCCCTTCACTCTCTTTTTGAATGTTCTGTT
GGTCCTCAAGCCCAGGGAATAAATTTTCTTGCATTGATTCAGATTCTCCGAGCTTTATATCTCT
TAGTGTTGAAATGTCCTTCAAAAGTTCAGAAAAGGGAAAAAAAACGGTTGGTATTTGAATGCCA
AAAGAAGCACTATAAAATGAGACCATTTCTATAATAAAGACTTACTTCCTCCCCTGTACATTTA
CAAGTTGACGGTGGTTGGTACTGTAATGATGTAGACAGTAGACCTCTGGAATTATTTTCTTCAG
CTAGAGTTTCTAAGTATCTGGAATTATTTTCTGCAAGTCGCGTATTGTTCCTTAAATGACACAG
TTGGTAACATAAGTCATTTAGGTCTTTTTCAAGTTTTGAGACAGTATTCTCCAAGGAGGCTATG
CTAATTATTAGCTCCTGTGCCTGCACGTGAAATATTGAAGTAGAAAATATATTAAAGAGTGGCT
ACCTAGATACACATGCAAAATATCCACTAAAATGCAATCCGTACCTTGTTTGGAAGCTTTGCAG
AGGGCTCAAGTATCAGTGTAGCATTATTTGTGATGGCATCTGTTAATGCCAACTGCAAGTCAAT
CTCTTCTTCCAGTTGCCTCTGCAGTTTCTTTACCTGAAACATGTATAACATCTGAAAATATTAG
CTCTTAGTCCTTACTCAGTTGAAATGCAAATATAGTTCCGTCAGAGTAACTAAATTTTTAGCAA
ACATTAGGTAGCAAATATTAGACTTCATTTGAGGACCACTCTATGAATAAATTTTCAATGAAGC
ATTGGATAATGCCACAGCCTATACTAGCTAACCCCATCAGTACCAACTTTCATTGAACAACAGG
AACAAAAGTCGTCAGAACTCAAACACGAGCAGAATTACACCAAGAAAAGCACTCACTTCTTGCT
CGAGCTCCGATCTGTACCGCCGCATCCTTACCCTTCTGCTTCCATCCCTCTTGCCAGTGCCATT
GCTACTATCATC
						
					

			
		

Sequences
Splice junction sequence	CAAGAAAAGCACTCACTTCTTGCTCGAGCTCCGATCTGTACCGCCGCATCCTTACCCTTCTGCT TCCATCCCTCTTGCCAGTGCCATTGCTACTATCATCatgcattatcaacgtattgtacaggtta atccaaaatgctaaccgctcagcacaggtcatacatgtagggtcaacctttgatagttgctcca cgagattc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATGCATTATCAACGTATTGTACAGGTTAATCCAAAATGCTAACCGCTCAGCACAGGTCATACAT GTAGGGTCAACCTTTGATAGTTGCTCCACGAGATTCCTGCAGACGAGAGTAACTTAAACAATTA ATAGCAATCGTATCAAAGTCATGTATAATATAATGTCCATCATTTATTCATAAACGTAATACCA AGCAGTGCTACTTTGCACTACAAGGTAGAAACAAACACTGAAGAATTTTTTGTTATAACTGAAT CTTCCGCTGTAGCATTTTTCTCGCATGCTTAATTATTGTTATACTTTTGCTTCTGTAAATTGGT CTAGGCTATTTATTTAGACATGAAATGAAATCCATTAGTGTTGATAGCTACAGATAGAGTTTAA TAAGGAAACCTGAAATTTTTTAGAGCTTCAGATGCATATGCAAGCTGTTCCTTGCCAACATACA TCCAAGACACCTCAGCTACTGAACAATAGTTCCCAATGTCTCTTCGAACTTCCTTGCCATTAAC GTTGTAGGGATCGAAGTATCTAACTTCATCAATACTGTCATGGTTTGAATCAACTGAAGGGCTT TGCATCACTGATGCCATCAAGGATGAATCTGATACAGATGTCAATGTACAGCCAGATAGACGTT CTGTTGATGAAATTGAATTAACAGAAGACCCTTTTGGTGATATCTCGGATGATGAGTCAGATAA ACGAAGGAAGATATCTCTCATACAGCGCACCATTTCTTCAGAGAGCTTATTTGGATTGCCATTC CACACATTACCATTGATGCTGCTTTTCCTCTGATGAGATTGGTCAAATGATAACGCATCTATTA TCTGATATTCTCTGCCTCCATTTTCCATAGGATAGGACTCTTGCATCTGCCAAGAAACAAGCTA AAATTTACTTTTTGATAACTTAAAATATTTTGATAAAGCATAAATTCATGTTTGCCTAATACTG ATAAATATAAACCTCTTCGTTCCAGTGTTTTTCCAACAATCTATTTGAAGGAACATCTTGATGC TCTTCGAGAAGCCCATCTTGAGATACTATCTCTCTCCCTTCACTCTCTTTTTGAATGTTCTGTT GGTCCTCAAGCCCAGGGAATAAATTTTCTTGCATTGATTCAGATTCTCCGAGCTTTATATCTCT TAGTGTTGAAATGTCCTTCAAAAGTTCAGAAAAGGGAAAAAAAACGGTTGGTATTTGAATGCCA AAAGAAGCACTATAAAATGAGACCATTTCTATAATAAAGACTTACTTCCTCCCCTGTACATTTA CAAGTTGACGGTGGTTGGTACTGTAATGATGTAGACAGTAGACCTCTGGAATTATTTTCTTCAG CTAGAGTTTCTAAGTATCTGGAATTATTTTCTGCAAGTCGCGTATTGTTCCTTAAATGACACAG TTGGTAACATAAGTCATTTAGGTCTTTTTCAAGTTTTGAGACAGTATTCTCCAAGGAGGCTATG CTAATTATTAGCTCCTGTGCCTGCACGTGAAATATTGAAGTAGAAAATATATTAAAGAGTGGCT ACCTAGATACACATGCAAAATATCCACTAAAATGCAATCCGTACCTTGTTTGGAAGCTTTGCAG AGGGCTCAAGTATCAGTGTAGCATTATTTGTGATGGCATCTGTTAATGCCAACTGCAAGTCAAT CTCTTCTTCCAGTTGCCTCTGCAGTTTCTTTACCTGAAACATGTATAACATCTGAAAATATTAG CTCTTAGTCCTTACTCAGTTGAAATGCAAATATAGTTCCGTCAGAGTAACTAAATTTTTAGCAA ACATTAGGTAGCAAATATTAGACTTCATTTGAGGACCACTCTATGAATAAATTTTCAATGAAGC ATTGGATAATGCCACAGCCTATACTAGCTAACCCCATCAGTACCAACTTTCATTGAACAACAGG AACAAAAGTCGTCAGAACTCAAACACGAGCAGAATTACACCAAGAAAAGCACTCACTTCTTGCT CGAGCTCCGATCTGTACCGCCGCATCCTTACCCTTCTGCTTCCATCCCTCTTGCCAGTGCCATT GCTACTATCATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.105177937

Conservation Information
Conserved circRNAs	NA
PMCS	0.105177937

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							28913394-28912397(+)
28913570-28911949(+)
28913934-28911926(-)
						
					

						Potential amino acid sequence
						
							MLIISSCALFGSFAEGSSISVALFVMASVNANCKSISSSSCLCSFFTSCSSSDLYRRILTLLLP
SLLPVPLLLSSCIINVLYRLIQNANRSAQVIHVGSTFDSCSTRFLKFFRASDAYASCSLPTYIQ
DTSATEQ*(+)
MPTASQSLLPVASAVSLLLARAPICTAASLPFCFHPSCQCHCYYHHALSTYCTG*(+)
MRRYRSELEQEVKKLQRQLEEEIDLQLALTDAITNNATLILEPSAKLPNKAQELIISIASLENT
VSKLEKDLNDLCYQLCHLRNNTRLAENNSRYLETLAEENNSRGLLSTSLQYQPPSTCKCTGEED
ISTLRDIKLGESESMQENLFPGLEDQQNIQKESEGREIVSQDGLLEEHQDVPSNRLLEKHWNEE
MQESYPMENGGREYQIIDALSFDQSHQRKSSINGNVWNGNPNKLSEEMVRCMRDIFLRLSDSSS
EISPKGSSVNSISSTERLSGCTLTSVSDSSLMASVMQSPSVDSNHDSIDEVRYFDPYNVNGKEV
RRDIGNYCSVAEVSWMYVGKEQLAYASEALKNFRNLVEQLSKVDPTCMTCAERLAFWINLYNTL
IMHDDSSNGTGKRDGSRRVRMRRYRSELEQEVKKLQRQLEEEIDLQLALTDAITNNATLILEPS
AKLPNKAQELIISIASLENTVSKLEKDLNDLCYQLCHLRNNTRLAENNSRYLETLAEENNSRGL
LSTSLQYQPPSTCKCTGEEDISTLRDIKLGESESMQENLFPGLEDQQNIQKESEGREIVSQDGL
LEEHQDVPSNRLLEKHWNEEMQESYPMENGGREYQIIDALSFDQSHQRKSSINGNVWNGNPNKL
SEEMVRCMRDIFLRLSDSSSEISPKGSSVNSISSTERLSGCTLTSVSDSSLMASVMQSPSVDSN
HDSIDEVRYFDPYNVNGKEVRRDIGNYCSVAEVSWMYVGKEQLAYASEALKNFRNLVEQLSKVD
PTCMTCAERLAFWINLYNTLIMHDDSSNGTGKRDGSRRVRMRRYRSELEQEVKKLQRQLEEEID
LQLALTDAITNNATLILEPSAKLPNKAQELIISIASLENTVSKLEKDLNDLCYQLCHLRNNTRL
AENNSRYLETLAEENNSRGLLSTSLQYQPPSTCKCTGEEDISTLRDIKLGESESMQENLFPGLE
DQQNIQKESEGREIVSQDGLLEEHQDVPSNRLLEKHWNEEMQESYPMENGGREYQIIDALSFDQ
SHQRKSSINGNVWNGNPNKLSEEMVRCMRDIFLRLSDSSSEISPKGSSVNSISSTERLSGCTLT
SVSDSSLMASVMQSPSVDSNHDSIDEVRYFDPYNVNGKEVRRDIGNYCSVAEVSWMYVGKEQLA
YASEALKNFRNLVEQLSKVDPTCMTCAERLAFWINLYNTLIMHDDSSNGTGKRDGSRRVRMRRY
RSELEQEVKKLQRQLEEEIDLQLALTDAITNNATLILEPSAKLPNKAQELIISIASLENTVSKL
EKDLNDLCYQLCHLRNNTRLAENNSRYLETLAEENNSRGLLSTSLQYQPPSTCKCTGEEDISTL
RDIKLGESESMQENLFPGLEDQQNIQKESEGREIVSQDGLLEEHQDVPSNRLLEKHWNEEMQES
YPMENGGREYQIIDALSFDQSHQRKSSINGNVWNGNPNKLSEEMVRCMRDIFLRLSDSSSEISP
KGSSVNSISSTERLSGCTLTSVSDSSLMASVMQSPSVDSNHDSIDEVRYFDPYNVNGKEVRRDI
GNYCSVAEVSWMYVGKEQLAYASEALKNFRNLVEQLSKVDPTCMTCAERLAFWINLYNTLIMH(
-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	28913394-28912397(+) 28913570-28911949(+) 28913934-28911926(-)
Potential amino acid sequence	MLIISSCALFGSFAEGSSISVALFVMASVNANCKSISSSSCLCSFFTSCSSSDLYRRILTLLLP SLLPVPLLLSSCIINVLYRLIQNANRSAQVIHVGSTFDSCSTRFLKFFRASDAYASCSLPTYIQ DTSATEQ(+) MPTASQSLLPVASAVSLLLARAPICTAASLPFCFHPSCQCHCYYHHALSTYCTG(+) MRRYRSELEQEVKKLQRQLEEEIDLQLALTDAITNNATLILEPSAKLPNKAQELIISIASLENT VSKLEKDLNDLCYQLCHLRNNTRLAENNSRYLETLAEENNSRGLLSTSLQYQPPSTCKCTGEED ISTLRDIKLGESESMQENLFPGLEDQQNIQKESEGREIVSQDGLLEEHQDVPSNRLLEKHWNEE MQESYPMENGGREYQIIDALSFDQSHQRKSSINGNVWNGNPNKLSEEMVRCMRDIFLRLSDSSS EISPKGSSVNSISSTERLSGCTLTSVSDSSLMASVMQSPSVDSNHDSIDEVRYFDPYNVNGKEV RRDIGNYCSVAEVSWMYVGKEQLAYASEALKNFRNLVEQLSKVDPTCMTCAERLAFWINLYNTL IMHDDSSNGTGKRDGSRRVRMRRYRSELEQEVKKLQRQLEEEIDLQLALTDAITNNATLILEPS AKLPNKAQELIISIASLENTVSKLEKDLNDLCYQLCHLRNNTRLAENNSRYLETLAEENNSRGL LSTSLQYQPPSTCKCTGEEDISTLRDIKLGESESMQENLFPGLEDQQNIQKESEGREIVSQDGL LEEHQDVPSNRLLEKHWNEEMQESYPMENGGREYQIIDALSFDQSHQRKSSINGNVWNGNPNKL SEEMVRCMRDIFLRLSDSSSEISPKGSSVNSISSTERLSGCTLTSVSDSSLMASVMQSPSVDSN HDSIDEVRYFDPYNVNGKEVRRDIGNYCSVAEVSWMYVGKEQLAYASEALKNFRNLVEQLSKVD PTCMTCAERLAFWINLYNTLIMHDDSSNGTGKRDGSRRVRMRRYRSELEQEVKKLQRQLEEEID LQLALTDAITNNATLILEPSAKLPNKAQELIISIASLENTVSKLEKDLNDLCYQLCHLRNNTRL AENNSRYLETLAEENNSRGLLSTSLQYQPPSTCKCTGEEDISTLRDIKLGESESMQENLFPGLE DQQNIQKESEGREIVSQDGLLEEHQDVPSNRLLEKHWNEEMQESYPMENGGREYQIIDALSFDQ SHQRKSSINGNVWNGNPNKLSEEMVRCMRDIFLRLSDSSSEISPKGSSVNSISSTERLSGCTLT SVSDSSLMASVMQSPSVDSNHDSIDEVRYFDPYNVNGKEVRRDIGNYCSVAEVSWMYVGKEQLA YASEALKNFRNLVEQLSKVDPTCMTCAERLAFWINLYNTLIMHDDSSNGTGKRDGSRRVRMRRY RSELEQEVKKLQRQLEEEIDLQLALTDAITNNATLILEPSAKLPNKAQELIISIASLENTVSKL EKDLNDLCYQLCHLRNNTRLAENNSRYLETLAEENNSRGLLSTSLQYQPPSTCKCTGEEDISTL RDIKLGESESMQENLFPGLEDQQNIQKESEGREIVSQDGLLEEHQDVPSNRLLEKHWNEEMQES YPMENGGREYQIIDALSFDQSHQRKSSINGNVWNGNPNKLSEEMVRCMRDIFLRLSDSSSEISP KGSSVNSISSTERLSGCTLTSVSDSSLMASVMQSPSVDSNHDSIDEVRYFDPYNVNGKEVRRDI GNYCSVAEVSWMYVGKEQLAYASEALKNFRNLVEQLSKVDPTCMTCAERLAFWINLYNTLIMH( -)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0692800_circ_g.2

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