Detail information of Zm00001d040166_circ_g.7


General Information
CircRNA Name Zm00001d040166_circ_g.7
ID in PlantcircBase zma_circ_007535
Alias zma_circ_0001430
Organism Zea mays
Position chr3: 30117881-30121157  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d040166
Parent gene annotation ataxia-telangiectasia mutated
Parent gene strand -
Alternative splicing Zm00001d040166_circ_g.8
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d040166_T047:6
Zm00001d040166_T048:6
Zm00001d040166_T011:1
Zm00001d040166_T004:6
Zm00001d040166_T049:4
Zm00001d040166_T037:6
Zm00001d040166_T040:6
Zm00001d040166_T045:6
Zm00001d040166_T028:6
Zm00001d040166_T026:5
Zm00001d040166_T012:6
Zm00001d040166_T051:2
Zm00001d040166_T005:6
Zm00001d040166_T044:6
Zm00001d040166_T013:6
Zm00001d040166_T015:6
Zm00001d040166_T046:6
Zm00001d040166_T020:6
Zm00001d040166_T041:6
Zm00001d040166_T014:6
Zm00001d040166_T042:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTCCATCAAAAGCAGCCAACAATTTAGACAAAATATTACAGCACTGGCCTTGCAGTGGTTTT
TGCTGAATATAGTTCCCCACTATAGAAATAATATAGcctcagtgtttgtgaagcagcatctatt
atttcaacagattcatcagataaataagtcttcaagagtttcaaaagcccaaccagaacatcat
cagaaata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 847
Transcript exons: 30117881-30118099,30118195-30118393,30120450-30120496,30
120579-30120677,30120792-30120932,30121016-30121157
CCTCAGTGTTTGTGAAGCAGCATCTATTATTTCAACAGATTCATCAGATAAATAAGTCTTCAAG
AGTTTCAAAAGCCCAACCAGAACATCATCAGAAATACCATAGTTTGTGGATAATTTATCCTCCT
TGGAAGCAGAACCAGTATGTAGTTGTAAAGAATAATTTTCGGTGGTAGTTGGCAGACGGAATAT
TACTTGATGTGCATCAGATATACCAGCCCTAGAGATAAAATCAGCAAGCACCCAAGAAGCTTCA
TTTGCTACAGATGATGAGCTACAAATGTCAACAAGAGCCCATACAGCAGAAATGACATCTGGGT
CACTATGCCAGCAGCTAACCATGTTTGTATCAGCCGCAGATAGGTCACTTCTACGAATGATTTC
TCCCAAAAATAACTTTTTGTGATACGCACGAAGACTCAACAAAAATAGTTCTGGTGGTAAATAA
GGAGCCTTATTAACAAACTTTAAGAACTGATTCCTTGAAGAATGTGAGGCAGAAAGTGAAGCAT
GAAACTCCTGTACATCTTTCAAGCAATCAAGATCAGGAAGTGGTTCTAACTCTCTTATGTAATC
ATAAAGCAGAGGATCAATCTCCACTGTCAATTGATGGAGTAAAGAAAGAACTCTTGATGAATCT
TCAGTACCACTTCTTTCTTCTTTCTCATTAATTAGGCAGGAAAAAATTAATTTTGGAACTACTA
CCTGAAGCTGTCTGCCAAGCACTTGCAGGGTTTCAGCAGAGGTGTTTCCATCAAAAGCAGCCAA
CAATTTAGACAAAATATTACAGCACTGGCCTTGCAGTGGTTTTTGCTGAATATAGTTCCCCACT
ATAGAAATAATATAG

Genomic sequence CCTCAGTGTTTGTGAAGCAGCATCTATTATTTCAACAGATTCATCAGATAAATAAGTCTTCAAG
AGTTTCAAAAGCCCAACCAGAACATCATCAGAAATACCATAGTTTGTGGATAATTTATCCTCCT
TGGAAGCAGAACCAGTATGTAGTTGTAAAGAATAATTTTCGGTGGTAGTTGGCAGACGGAATAT
TACTTGATGTGCATCAGATATACCAGCCTGCGCTAGCATTAAAGAAATCAACTGACTGAGATGA
AAAATTGTACATCACCAACATACTGTAGCATCAGAAAAGATTAAGGCCAAAAACATACCCTAGA
GATAAAATCAGCAAGCACCCAAGAAGCTTCATTTGCTACAGATGATGAGCTACAAATGTCAACA
AGAGCCCATACAGCAGAAATGACATCTGGGTCACTATGCCAGCAGCTAACCATGTTTGTATCAG
CCGCAGATAGGTCACTTCTACGAATGATTTCTCCCAAAAATAACTTTTTGTGATACGCACGAAG
ACTGAAAGTATAAGAAATGAAAGAAGTGTTATAACAATAGAAACGTGTTTGGAAAAGAAAAATA
ATAATACAATACCATAAGGGTCTAGGCTAACATAATTTGCATTGGAAAAGAAAAATAATAATAC
AAAATATAGGAAGTGTTATATTTTGAAAGTATAAGAAATGAAAGAAGTGTGAGGTCACAATTTT
GGCCAGCTTGTTTGGAAATAAAACAACGCTATCTTATGGGTTCATTTAAGAATGTGAGAAGAGC
TTTAAGGAACAGGTTTTCGGAATACACGTGGTTAGGTTATCTCAACCAAATCGTGCATATGATC
GGTAGACTGCACTGTTCATATAGTGATGTTTGAATTAGGAGATGTAATGAGAGATAGGATGGAT
AAGCCTTAGTACAATTTCGAGCTGGGTCCAAACATTTATTTGGAATTTGTTCTAACACTAATAT
TTGAGTGGCTAAATCTAAGGTATCAATTACTTCCTCGCCGTGCAGATGAATGAGTTAAAGTTGG
GTCATTTTGCTTGTGTGTTAAGGGTGTGTGTGTGTGTTCTATTAGTTCATAGTTATTACCCCAT
TTTCCTTCTTAATATAATGAATAATGATACATGGCTCTCATTTGTGTTTGCTAAAAAAAGTGGC
AAACACTATAAAAATATAGATGGACATTAAGCATTAGAAGAACACTGGCCATGTGGAGATGGTC
GAATGGAAAGAAATGATACAAAAGTTGGAACATGTCAATTTGACAGATGGTCTGAGATCAAGTG
CTAGCTAGAAAAATCTGTGAAATTCAGTACAAGATCGTTGTATAGAGACAGAGTTATGACCTTT
GGAAGGTAGCAATCAATAAATGATGGGGTAGAGGACTAAAATTCCCACGAGTTCTAAATTTTCT
AACCGTCTTTCATGATAAAATTCAATCAGCTGGACATCTCACAAGGAGGAAATCAACAGGTAAT
GAAATATGCAGGCTATGTGGGCAGAGAGGAACAACTGATTGTGTTACATTTCAACTCCAGTCTG
ATGCCACTTCCTTTGATGACTGGTGGGATCTATTAAGTTGCATGCACCAACCACTTTAACGCAA
AAGCTTAAGCTGATAGAAAGAGCTAGGCAACTCATATTCTCTAACACTCTCCCTCACATCGAGC
CTCTCTTAGGTCCCAGACATGGAATACGAGCGAGCAACAATTATTTTATTTTAGTGCTAACCAG
GATTCAAACTCGAAACCTTTGGTTCTTATACCATTTTAAGTCGCATGCACCAACTAGTTCAATC
CAAAAGGCTAAGCTAATAGGAACAGCTAGGGGGCAATTCACTTATATTCTCCAACAGGCTCAAA
CGAATGACAAAGTAGAAGAAATGAGCTTTACTTTTTTGGGTTGGGTTGATCTATTCTGTATCGC
CAAGAGAAAGGGCCTCTAGCTGAGTTGGTGAGGTGTTCTGAGTAACAGTCCTTAGGAACTGAGT
TCAAATCCCAGTGGGAGCGAATTTCAGGCTGAGGTTAAAAAAGGTCACTCGCTGGTTCCCTCGG
TTGTGTGCACATGAGAGGGATTGACCTACGGGGGCGGATCCTCGTGTAGGGGCTGGGAAGGCTC
AAAGCACGAGTAAAACTCCGACCTATAGGGAGCAGACTCTCTTGCTGCACGGAGGGCCAGATTT
CGTGACCTTTCTCGGTCAGGGCTCCGATTGAGCTTCCTCTTAATATAATACCGTGGGGGCGGTC
TTTCCCCTACCAGTCGAGTTTTTATTCTGTATCGCCAAATGTGTATGTTCTTGAGTTGTCCTAG
GAGTGTGTGTGTGTTTTTTGTATGGGGTTTTTAAACCCTAGCGCCTTTCTTGATATAAAGATAT
GCAAATCTCATGCATGTTTGAGGGGAAAAAAACTGCACTGAAATGGTGGTATGGATGCAAATAC
CACACAACACGCTACATGTAGGACCATAACCCACATGTACAACATGCTACATGTAGAACCAGAC
CCCTACATGTCACTGACACAGACTGGTGGTATCAAATGATGGTATGGATGAAATTACACCAAGG
AAATATTACCTCAACAAAAATAGTTCTGGTGGTAAATAAGGAGCCTTATTAACAAACTACAGGA
AGTCAAAAGTGATGAGTCAGCTCATAATGAACATAAATTAAAAAAAGAAAAGAAAGGAATGGGA
AAAATAAGACCTTTAAGAACTGATTCCTTGAAGAATGTGAGGCAGAAAGTGAAGCATGAAACTC
CTGTACATCTTTCAAGCAATCAAGATCAGGAAGTGGTTCTAACTCCTGTACGACCAGTCAAAAC
AAAATAAACCAAACATAAATTACGCTTAATAACAACACACAGATACCAGTAAGAACTAAGAATG
CAATTATATATGTAGAGAAGATGAAGCATACTCTTATGTAATCATAAAGCAGAGGATCAATCTC
CACTGTCAATTGATGGAGTAAAGAAAGAACTCTTGATGAATCTTCAGTACCACTTCTTTCTTCT
TTCTCATTAATTAGGCAGGAAAAAATTAATTTTGGAACTACTACCTGTGACAGTTCAGTTGTAA
GTGCTGAGCAAACAGAAGTTCATTAAACAATTGTTTTTTCGGATTAGTGTTTGTAAAATCCACC
TGAAGCTGTCTGCCAAGCACTTGCAGGGTTTCAGCAGAGGTGTTTCCATCAAAAGCAGCCAACA
ATTTAGACAAAATATTACAGCACTGGCCTTGCAGTGGTTTTTGCTGAATATAGTTCCCCACTAT
AGAAATAATATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.069871544
Functional Information
Coding potential Y
Potential coding position 30118319-30121097(-)
Potential amino acid sequence MVSCWHSDPDVISAVWALVDICSSSSVANEASWVLADFISRAGISDAHQVIFRLPTTTENYSLQ
LHTGSASKEDKLSTNYGISDDVLVGLLKLLKTYLSDESVEIIDAASQTLRLYYFYSGELYSAKT
TARPVL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b