Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037401_circ_g.3 |
ID in PlantcircBase | zma_circ_009035 |
Alias | zma_circ_0002315 |
Organism | Zea mays |
Position | chr6: 124551146-124552260 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d037401 |
Parent gene annotation |
proteasome activating protein 200 |
Parent gene strand | - |
Alternative splicing | Zm00001d037401_circ_g.1 Zm00001d037401_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037401_T002:4 Zm00001d037401_T001:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.143666435 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
124551981-124551187(+) 124551983-124551148(-) 124551184-124552231(-) |
Potential amino acid sequence |
MIKEERETESVVKCLKTVCEIRMLQEPRTTCSGAFGSRKFPVSVRTQLEIREGQRFNNFVSDLP AYLQCSPLVSKPKALI*(+) MGILESSHHESLKCQKAITELFVTYNIRFSGISRSFFKTPENQADKPGFLSLISQINALGFETN GLHWRYAGRSLTKLLKRWPSLISNCVLTLTGNLRDPKAPEHVVLGSCSILISQTVLRHLTTDSV SLSSFIMGILESSHHESLKCQKAITELFVTYNIRFSGISRSFFKTPENQADKPGFLSLISQINA LGFETNGLHWRYAGRSLTKLLKRWPSLISNCVLTLTGNLRDPKAPEHVVLGSCSILISQTVLRH LTTDSVSLSSFIMGILESSHHESLKCQKAITELFVTYNIRFSGISRSFFKTPENQADKPGFLSL ISQINALGFETNGLHWRYAGRSLTKLLKRWPSLISNCVLTLTGNLRDPKAPEHVVLGSCSILIS QTVLRHLTTDSVSLSSFIMGILESSHHESLKCQKAITELFVTYNIRFSGISRSFFKTPENQADK PGFLSLISQINALGFETNGLHW(-) MLWALRLMDYIGGMLEDRLQNC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |