Detail information of BGIOSGA014590_circ_igg.5


General Information
CircRNA Name BGIOSGA014590_circ_igg.5
ID in PlantcircBase osi_circ_014628
Alias Chr04:28208951_28209774(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26429335-26430158  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014591_circ_ig.1 BGIOSGA014590_circ_igg.1 BGIOSGA014590_circ_igg.2 BGIOSGA014590_circ_igg.3 BGIOSGA014590_circ_igg.4 BGIOSGA014590_circ_igg.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCAGGAAAATTCAGACATGGCAAATTGAATTCTCTTCTCATTGCACTACAAATCCTGCCAGC
ATTCCAAGGGGGCAGTAGAAGGATAGAGTCCGATCCccttggattgcttttaagactcgaaggg
tggaatcagtgcatcactgtccatgggacaccaaatcgcagatgaccacacatggcagggtcat
ggagcgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGATTGCTTTTAAGACTCGAAGGGTGGAATCAGTGCATCACTGTCCATGGGACACCAAAT
CGCAGATGACCACACATGGCAGGGTCATGGAGCGTCCTTTTTCACATGGGGAGCCTTTGCCTTC
TATCCTTTGAAGTGGCTCCAGTACTTGGTCAGGGAGGGCCTGCTATTACAAAAGAATTGCTTCA
TTACTAAGTTCAATCCACCTTAACCAAATATCTCAAGGTGAAGGAAATGGTATCCAAACAAACA
AAAGCAAACTAAGAAAAATAATTCTATGCTGGTTCGTGATGAGCTGATGAGTTCACACGTAGCG
TACACAAACTGCCCAACATCACACAATGTAGTCTGGCCCAGGGCCATGGTCCAACCTGTCCTCC
TAAAGCCTCACCATATGTTGTTCGACTGCGACTAGAACCTGCAGTAGTCTAGTACAAGGAAGCA
ATTATCAGACTAGACACTTGAAACAAGCTGTTGAAAGGAGAACTTGCTATTCAGTTCAACAGTA
GGACCAACGAAAGCATTTCAAAAGTATTTTGCTTCAGTGCTTCTGTTCAGGCCTGGAATATCAT
GGAGAAGTAGTGATGTTCAATCAATCTATCACATAGATACCTTTTCACTTACTTTTCTTAAATG
ACAGGGAGCATTGACGATGCAGCAAAAATTAAACCAGGTATTGAGCAGAATTTTTCCTAGATAA
AGAAACGAGCAAACAAAAATAACCAGGAAAATTCAGACATGGCAAATTGAATTCTCTTCTCATT
GCACTACAAATCCTGCCAGCATTCCAAGGGGGCAGTAGAAGGATAGAGTCCGATCC
Conservation Information
Conserved circRNAs osa_circ_024791
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021