Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05200_circ_g.2 |
ID in PlantcircBase | ath_circ_000782 |
Alias | At_ciR415, Ath_circ_FC0003 |
Organism | Arabidpsis thaliana |
Position | chr1: 1507529-1507806 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, circseq_cup, find_circ |
Parent gene | AT1G05200 |
Parent gene annotation |
Glutamate receptor |
Parent gene strand | + |
Alternative splicing | AT1G05200_circ_g.1 |
Support reads | 37/1 |
Tissues | leaf/leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G05200.7:1 AT1G05200.4:1 AT1G05200.5:1 AT1G05200.2:1 AT1G05200.6:1 AT1G05200.3:1 AT1G05200.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.513230096 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a |