Detail information of BGIOSGA016875_circ_g.1


General Information
CircRNA Name BGIOSGA016875_circ_g.1
ID in PlantcircBase osi_circ_014611
Alias Chr04:27991751_27992798(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26221101-26222148  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016875
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016875_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016875-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAAT
ATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGgggaaagaaaggggtttggctaaagtta
ccagtggatcgctcagagtttgttcctatagcagtgaaggtattgttccttttcccgttgtgaa
ttcagaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTG
AAGGTATTGTTCCTTTTCCCGTTGTGAATTCAGAATACCTGAAGCTCACCTGTAGCGTTGAATC
TGAAAGATAAAATAAAAAATAAAAGAAAAAGAAAGGTGGGGGTTTTAGTCAGATATGCAATGGT
GATTTTGACATTGGAATTTGGAAAGTAACTCAGGAGATTGCTGATGGTGTTGCTTAACTCTGTC
TGCAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCC
TCATGAAGAGCCATGTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTTGGGGGGTTTGTG
ATCAACGATCAAATGGAGGTCGGTTTCATCTGGTTTGCTGTTGTTTTCATTGGAACAGTTTAAC
TGAAAGAGTTTGTGCGTCTGACTGTATTCTCAACAATTGAATAGGTCCTAGTGGTGCAAGAAAA
GTACTGTGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTCTTGCGGTAAGA
ACATATGTAATGGTACTAATATATACATATGATGTGTGTCGCTGTTACTAACGCGACGCTTGCT
TGCAGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTAAGAAA
TGGAACGCTTTGCTATTCAGTTCTCTCCTCATTACGATCAATTCTCAGTTCTTAAAGTACTGTG
GTGTTATCAACTATGCAGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGTAATTATCTT
CCTCATGGCAGCATGTAATCCTATTGATTAGCTCTGTTGAAACTGTTCCCCCCTTAATCTGAAA
CTCTGAATTTTCTCTCACCAATTTTCATCTTTTACAATGATAGGCATGCACACAACGTGGCATT
TCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGAC
GAAACAGAGATTCAGGCAGCGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021