Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0978100_circ_g.4 |
| ID in PlantcircBase | osa_circ_006081 |
| Alias | Os_ciR2766 |
| Organism | Oryza sativa |
| Position | chr1: 43234771-43237271 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, find_circ |
| Parent gene | Os01g0978100 |
| Parent gene annotation |
Similar to Cysteine synthase, mitochondrial precursor (EC 2.5.1. 47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyas e) (CSase C) (CS-C) (OAS-TL C) (AtCS-C). (Os01t0978100-01);Simil ar to Cysteine synthase, mitochondrial precursor (EC 2.5.1.47) ( O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (C Sase C) (CS-C) (OAS-TL C) (AtCS-C). (Os01t0978100-02);Similar to Cysteine synthase, mitochondrial precursor (EC 2.5.1.47) (O- ac etylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C). (Os01t0978100-03) |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 4/4 |
| Tissues | root/shoot, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os01t0978100-03:6 Os01t0978100-01:6 Os01t0978100-02:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.182457577 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
43235427-43234834(+) 43237255-43234773(-) |
| Potential amino acid sequence |
MLIDAGMVNINLYPLEAAMKARPMPVFPLVGSTKTLFPGVIKPFSSASEIILYPILSLTLQQGS IISSLAATLATHPLTMLLRYTIGVLPMSSITSSRTSLSKFLGTNPAPMP*(+) MVYLNNIVKGCVANVAAKLEIMEPCCSVKDRIGYSMISDAEEKGLITPGKSVLVEPTSGNTGIG LAFIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTDAAKGMKGAVDKATEILNKTPDAYML QQFDNPANPKVHYETTGPEIWEDSKGKVDVFIGGIGTGGTISGAGRFLKEKNPGIKVIGIEPSE SNILSGGKPGPHKIQGIGAGFVPRNLDSEVLDEVIELIGKTPMVYLNNIVKGCVANVAAKLEIM EPCCSVKDRIGYSMISDAEEKGLITPGKSVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSM ERRVLLKAFGAELVLTDAAKGMKGAVDKATEILNKTPDAYMLQQFDNPANPKVHYETTGPEIWE DSKGKVDVFIGGIGTGGTISGAGRFLKEKNPGIKVIGIEPSESNILSGGKPGPHKIQGIGAGFV PRNLDSEVLDEVIELIGKTPMVYLNNIVKGCVANVAAKLEIMEPCCSVKDRIGYSMISDAEEKG LITPGKSVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTDAAKGM KGAVDKATEILNKTPDAYMLQQFDNPANPKVHYETTGPEIWEDSKGKVDVFIGGIGTGGTISGA GRFLKEKNPGIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDSEVLDEVIELIGKTPMV YLNNIVKGCVANVAAKLEIMEPCCSVKDRIGYSMISDAEEKGLITPGKSVLVEPTSGNTGIGLA FIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTDAAKGMKGAVDKATEILNKTPDAYMLQQ FDNPANPKVHYETTGPEIWEDSKGKVDVFIGGIGTGGTISGAGRFLKEKNPGIKVIGIEPSESN ILSGGKPGPHKIQGIGAGFVPRNLDSEVLDEVIE(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017 |