Detail information of Os01g0978100_circ_g.4


General Information
CircRNA Name Os01g0978100_circ_g.4
ID in PlantcircBase osa_circ_006081
Alias Os_ciR2766
Organism Oryza sativa
Position chr1: 43234771-43237271  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0978100
Parent gene annotation Similar to Cysteine synthase, mitochondrial precursor (EC 2.5.1.
47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyas
e) (CSase C) (CS-C) (OAS-TL C) (AtCS-C). (Os01t0978100-01);Simil
ar to Cysteine synthase, mitochondrial precursor (EC 2.5.1.47) (
O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (C
Sase C) (CS-C) (OAS-TL C) (AtCS-C). (Os01t0978100-02);Similar to
Cysteine synthase, mitochondrial precursor (EC 2.5.1.47) (O- ac
etylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase
C) (CS-C) (OAS-TL C) (AtCS-C). (Os01t0978100-03)
Parent gene strand -
Alternative splicing NA
Support reads 4/4
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0978100-03:6
Os01t0978100-01:6
Os01t0978100-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTGCAACAGGGCTCCATAATCTCGAGCTTAGCAGCGACATTGGCAACACATCCCTTGACGAT
GTTGTTGAGATATACCATTGGAGTCTTGCCGATGAGctcaatcacttcatcgagaacttcacta
tccaagttccttggaacaaatcctgccccaatgccttgaatcttatgtgggcctaaacaaatgg
ggtgaatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 702
Transcript exons: 43234771-43234850,43234927-43234978,43235054-43235191,43
235269-43235532,43237023-43237080,43237162-43237271
CTCAATCACTTCATCGAGAACTTCACTATCCAAGTTCCTTGGAACAAATCCTGCCCCAATGCCT
TGAATCTTATGTGGGCCAGGTTTTCCACCAGAGAGTATGTTACTCTCAGAAGGCTCAATACCAA
TAACCTTAATTCCAGGATTTTTCTCTTTCAGGAAACGGCCAGCACCAGATATTGTTCCACCTGT
TCCAATTCCACCAATGAATACATCCACCTTCCCTTTAGAATCCTCCCAGATTTCTGGCCCAGTA
GTCTCATAATGTACCTTTGGGTTGGCAGGGTTGTCAAACTGCTGCAGCATATAGGCATCAGGTG
TCTTATTTAAAATCTCTGTAGCCTTATCTACAGCCCCCTTCATCCCTTTTGCGGCATCAGTAAG
GACAAGTTCAGCGCCAAAAGCTTTGAGTAGAACTCTTCTCTCCATGCTCATTGATGCAGGCATG
GTCAATATTAATTTATATCCTCTGGAAGCAGCAATGAAGGCAAGACCAATGCCTGTATTTCCAC
TTGTTGGTTCCACCAAAACACTCTTTCCAGGAGTTATCAAGCCTTTCTCTTCCGCATCAGAAAT
CATACTGTATCCTATCCTGTCCTTGACACTGCAACAGGGCTCCATAATCTCGAGCTTAGCAGCG
ACATTGGCAACACATCCCTTGACGATGTTGTTGAGATATACCATTGGAGTCTTGCCGATGAG

Genomic sequence CTCAATCACTTCATCGAGAACTTCACTATCCAAGTTCCTTGGAACAAATCCTGCCCCAATGCCT
TGAATCTTATGTGGGCCTAAACAAATGGGGTGAATTATAAGGGAAAGAGCAGACATTTGACAAA
CCTTAAGGAAGTAAGAACACAAACATACCAGGTTTTCCACCAGAGAGTATGTTACTCTCAGAAG
GCTCAATACCAATAACCTACAAAAGATAACTGTGTAAGGACTATAAAGTGCATATAACATCAGA
TTTTGCATGGATGGAACTTAAAGAAACCTTAATTCCAGGATTTTTCTCTTTCAGGAAACGGCCA
GCACCAGATATTGTTCCACCTGTTCCAATTCCACCAATGAATACATCCACCTTCCCTTTAGAAT
CCTCCCAGATTTCTGGCCCAGTAGTCTCATAATGTACCTGCTTGAAAATGAAGAAAGACAAACA
TTGGGCACAGTACAAATCTAGACAGACATGTGGCTAGTTCTATATGTTACCTTTGGGTTGGCAG
GGTTGTCAAACTGCTGCAGCATATAGGCATCAGGTGTCTTATTTAAAATCTCTGTAGCCTTATC
TACAGCCCCCTTCATCCCTTTTGCGGCATCAGTAAGGACAAGTTCAGCGCCAAAAGCTTTGAGT
AGAACTCTTCTCTCCATGCTCATTGATGCAGGCATGGTCAATATTAATTTATATCCTCTGGAAG
CAGCAATGAAGGCAAGACCAATGCCTGTATTTCCACTTGTTGGTTCCACCAAAACACTCTGAGC
ATAGAGCATAAAGTAATATGTCATGCATGGTAAGTCACTGGGTGAGAGCTGAAATAATGTACAG
AGAGAAAAGAAACAATGAAGTAGGATTGGATAAAGTTTTTACACACTTACACACGCACGCACAT
GCGCGGTCACTAGGCTTAGAGCTGAAGTAACGTAATGAGAAAAAAAAAAGAAGAAACAATGAAG
TAGCATCTGAGAAAGTTTTCAATAATTCAAACCAACATGACATATCCATATAAATTTAAGAGTA
AATTTCACAAAACTACAGGTATTTTGCATAATTTATCACGAAACTACAAATTTAAGAGCTTGTT
TCACAAATCTACAGATTCAGTGTCTCCGTTTATCACAAAGCTACAGGTATTTTGTACAATCTAT
CACAAAACTACAGATTTAAGAACTTGTTTCACAAAACTATAGATTTAGTGTATTCGTTTATCAC
ATAGCTACACATTTAGTGTCTTCATTTATCACAAAACTACATATTTAGTGTCCATTATCACAAA
ACTACATTTTTTAATAATGCTAAAACCTGTAGATTTGTGATAATGAAGATACTAAACTTGTAGT
TTTGTGATAAATGAAGATATTAAATCTGTAGTTTTGTAAAACAAGTTCCTAAATCTGTAGTTTT
GTGATATATTGTGCAAAGTACCTGCAGTTTTGTGATAAACGAAGACATTGAATCTATAGTTTTG
TGAAACAAGTTCTTAAATCTGTAGTTTTGTGATAGATCGTGCAAAGTATATGTAGTTTTATGAA
ATTTACTCTAAATTTAATATCCGTGGAAAAATTTCATAACTATTTGGATGAATATGATAGTGCA
TAGAGCCATGGACATCGATGCATATACTACTGTAGTTGCTTTTCCAATAGAGTTGCCATAATTT
TATTTTGAACAATGAATAGCAAGTACCCTTGTTTTAGTGATGGGTGGAGGAATTATATGGCACT
GTTAATGCACTCTGTTCAAAATGTGAAACTGGACAAATGGATTATTCATAAACCATGGCTCCTA
GTTCAGGCACAGTTTGATTCTTGGGACACTCAATATGTATTGGTGTCTGAAACCAAATGTTTGT
TTCTAGGAAGCATCAAGAAATCTAGATGAATGAACAGACCATGTTTCCTCACTTGTCTTCTTAG
TAGTTAGTACTACCTCCGTTTTTTAATAAATGACGCCGTTGACTTTTTCTCACATGTTTGACCA
TTCGTTTTATTCAAAAATTTTATGCAAATGTATATGATATAAATCACACTTAATGTACTATGAG
TGATAAAACAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGACGAATGGT
CAAACATGTGAGAAAAAATCAACGGCGTCATCTATTAAAAAACGGAGGGAGTAGTAATAATCAG
GAAGAAGGTCAAAATGTGAAAGACGGCAACAAGTGGTTATGCATATATATATATAAACAAAAGA
ACATTGATTCACCTTTCCAGGAGTTATCAAGCCTTTCTCTTCCGCATCAGAAATCATACTGTAT
CCTATCCTGAAAAGAAATTGGGGGTATAAGGTGAGTCCAGCAAGGCAAGGAAAGGAAAGGAAAG
GAGAGAGGGCGGCGAATGTGTACCTGTCCTTGACACTGCAACAGGGCTCCATAATCTCGAGCTT
AGCAGCGACATTGGCAACACATCCCTTGACGATGTTGTTGAGATATACCATTGGAGTCTTGCCG
ATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.182457577
Functional Information
Coding potential Y
Potential coding position 43235427-43234834(+)
43237255-43234773(-)
Potential amino acid sequence MLIDAGMVNINLYPLEAAMKARPMPVFPLVGSTKTLFPGVIKPFSSASEIILYPILSLTLQQGS
IISSLAATLATHPLTMLLRYTIGVLPMSSITSSRTSLSKFLGTNPAPMP*(+)
MVYLNNIVKGCVANVAAKLEIMEPCCSVKDRIGYSMISDAEEKGLITPGKSVLVEPTSGNTGIG
LAFIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTDAAKGMKGAVDKATEILNKTPDAYML
QQFDNPANPKVHYETTGPEIWEDSKGKVDVFIGGIGTGGTISGAGRFLKEKNPGIKVIGIEPSE
SNILSGGKPGPHKIQGIGAGFVPRNLDSEVLDEVIELIGKTPMVYLNNIVKGCVANVAAKLEIM
EPCCSVKDRIGYSMISDAEEKGLITPGKSVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSM
ERRVLLKAFGAELVLTDAAKGMKGAVDKATEILNKTPDAYMLQQFDNPANPKVHYETTGPEIWE
DSKGKVDVFIGGIGTGGTISGAGRFLKEKNPGIKVIGIEPSESNILSGGKPGPHKIQGIGAGFV
PRNLDSEVLDEVIELIGKTPMVYLNNIVKGCVANVAAKLEIMEPCCSVKDRIGYSMISDAEEKG
LITPGKSVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTDAAKGM
KGAVDKATEILNKTPDAYMLQQFDNPANPKVHYETTGPEIWEDSKGKVDVFIGGIGTGGTISGA
GRFLKEKNPGIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDSEVLDEVIELIGKTPMV
YLNNIVKGCVANVAAKLEIMEPCCSVKDRIGYSMISDAEEKGLITPGKSVLVEPTSGNTGIGLA
FIAASRGYKLILTMPASMSMERRVLLKAFGAELVLTDAAKGMKGAVDKATEILNKTPDAYMLQQ
FDNPANPKVHYETTGPEIWEDSKGKVDVFIGGIGTGGTISGAGRFLKEKNPGIKVIGIEPSESN
ILSGGKPGPHKIQGIGAGFVPRNLDSEVLDEVIE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017