Detail information of Os06g0729500_circ_g.2


General Information
CircRNA Name Os06g0729500_circ_g.2
ID in PlantcircBase osa_circ_032507
Alias NA
Organism Oryza sativa
Position chr6: 31084988-31088560  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0729500
Parent gene annotation Protein of unknown function DUF789 domain containing protein. (O
s06t0729500-01)
Parent gene strand -
Alternative splicing Os06g0729500_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0729500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTGTGTTATGATCGACCAATGTGCTACACCGAGTGTGTGGTACGCTCTGTGGCCTTCTGTC
AGTCACTTCAAGTGCATACGGCATGAGATGGAGAGCttgtcaaacaactgtcgtcgccaaaatg
gttgttcagattcaaaaaattcaaatatgagctctccatttccaaactgctgatcacctttagt
atacaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTCAAACAACTGTCGTCGCCAAAATGGTTGTTCAGATTCAAAAAATTCAAATATGAGCTCTC
CATTTCCAAACTGCTGATCACCTTTAGTATACAAATCAGATGAGCTAATTGTTTCACGCAATTG
CTGTGGCAGAAGTTTCGTTAAGATTGGGAGAGAGCTCGGACATGGAGATGTTTTAGATGTGACA
TCCATACCAGCTGCTTCCTTATCAACTCTTCCAGTGCTAGCTCTCTTAGCTTGCCCAAATAATT
GAACCGCAGATAGATATGGCACAAAGTAGGTGGTGAACTGATGAGGACTATTCCACAAGCCTTT
AGACCTACGGAAATCTTGAGCCTTTACTTCCAGACCATAGCAGCAAGGTTCTTCATACCACTGC
CAAATTCTACTTAGAGTGATATCAGTACTCTGATGAAAGCACAGGCCATCTCTTACCCATTCCG
GTGAGCAAAAGTTTCTATCAGCAGGGCAAGTGCTACAGTACAGAACCGGAGAAGCAGAGGAAAT
AAATTGTTCAAAATCAGCAAGAGGCCTGCCAATGATAACTTGGACGTCTTCCACTCTCTGTTGG
GCCCTGTAAGCATCACAAACAGCTTCTCTCATCTTGTTGAAATCAGTACCAGTATCAGTATGCG
GTTGACATCTCAAATCAAGATGTCCAGACGAGTTTGGTTTATCAGATATCTCAGCAGCTAATTT
GTTGACTTCATTGTTAGCTGATGCAAGAACACTAGAAACATTGGTTTCAACACCAATATTAGCA
GAAATAGGAATACAATTAGTTAGAACTGAGGAATCAACAGCAGAAGTCTCTGAACCATCGAAGT
GGAGTATATTTTTCTTCCCAACAGCAACCCATTTCTGTGAAACGTGTGCAGCAGCAGAGTACAA
CTTACATTGTTTTCCAGTAGCAGAATACAACTTAGGGCATTCTTGAGGAGTATTCTCCATTGTC
AACTTCACATAACACCTTTCGTCCATTTCTGCAGGGGAAGGATCAGCACATAGGTTCCTGGAAT
TCGAATTTGTGGATATGGCCTTATTTTCGGTTGAGGAATAATGAGGATCCGCTTGCATGGTTGA
TGTACATTCCTCGCATGTGTCTTGTGGGACCAAATAAGAACCCATGTTGCAAGATGCTAGCGCT
GCTTTCTCAAAACCAGATTGTGAGCTCCCATCTCCATCAGCTGAGCCGTTGCTACCTACTCCAG
TATCAACACTGGAGTCCTTGTCATATACTAGTTGCATCATAGGCAATCCATCTTTCTGTTGCAA
GTGATTCTTTGGCACCATGACAATACCGTTCTTAGGAGCATGGTAGTTCCCTGATGACTGAGAA
GTACCCTGGTCAGAAGATAAACTTGTTTGTTGGTACAGTATTGATGTTTGCTTCTTGTACTTAT
ATCTGGAAAATGCTTGACATGAGTTTAGTGCATCATTTTCTTTGGCATGCTCCATTTCAATTCT
CTCGTCTGGTGAATGCTGATTACATGCTTTTCTCCTCTGATTTATTTTCATTGACCTTGTTAGA
TTATGTTGTGCAACCTTGTTAATGTTTTCCAGTACATCCTTGTTCTGAATAGCTGAATCAACCA
TACATCCTGCTCTAGATGTGTTCTCCACATTAAGTTTTTCTACTTTTTGCCACACAGAAGTTGA
ACTGTATTTTCCACTATGCTTGTTCTTATTAGTGCCTATTACTCCATTAGTTGCAGTCAAACTG
TAGCTAGATATTTCCTTTAATCTTGTTCTGCTCCTCCCAGGAATAACTGGAAGAGAAGTCTTGC
TGCTGCAGGCTTCACTACTGCACTTGACTCTTTCAGTATGATTACTGCTATCAGCAACATTCTT
TGAGCAGCATGAGCTGCATCCAAAGGAATCATTTGAATCTTCAGCATGAGTTATGCTTAAATGG
GCCCCTATCGGATGGCATGAATCCCTCACCTCATCATTGACACTGCAGTTCACACTGTTGTCCC
TTTCCAACTTCTTAAACAATGAATATGCTATTGCATCATTAGAGTTAGAAACACGTGCACATAG
TGATCTCTCGTAATTGTTTGATTCATCATTCAAGTAATGAACATCCTTGCAGCTAAATATCTCA
CCTACAGTTCTATTAGATGAACCTGTACATCCAGAATCCCCGCCATTCTCTTCACCAAAATGAG
CTTCCTTAACCAATGAGCTAGCAGAGGATGAGGTTTCTGACAATTTATCAGCCAGCAGATCAGT
AAGTACCTCAACAGGAGAAGCAGCATCAATATTCTCTTCACAATGGGTTTCTGATGGCAAATTG
AGCCCTTTGCAGACTGCTCTCCTGTAATGTTTCCCTTTCTTGTTTCCTTTCTTTTTAGGGCTCT
TTCTTGGAGGCTTATCATCATCATGCAGAATATCAGAATCAGATCTTACAGGAGCAGTAACAGA
TCTGGAAGAATTATTTACAAGCACATTGCTGGGAGGGAGTGCTGTCAATGACTTTTTGATTTTT
CTCCTATGCTGACGCTGTCTTAAGGTGCTTCCTGGTGGTGGACTTCCACTGGAAAATGGTTTAG
AATGATCGACTTGATCGTGCATGTTCTTTTCATTTGGACAGTCTAACCAGTAAAGTATTATTGG
CTGTGGGAACTGAATGATCTCTGTGCCAGCAGCTCCTGATGCGAAACAGCTTCTCTTGTTGATA
TCTTGTAATATGTTAGGAAGAAAAGGCACCAATTTCTGATCCGAGTTGTGCCCAATGGAAATAG
TTGCAAATGTAATGTTCCTGCAACAGCACAAACAGACAGTAAACATGTAGCTTTCCAGATATAT
GAATGACAGATATCAGAATAGAAATGGATACCAGTCAAAGGGAAATGAGAAAAAAAAACAAGGA
TATTGAGGTACAAAGTATTTGAGTACGGTGATTGCTGGTATCATAAATAGACATTCAGACAGAA
TAATAATAAGGAAAAAAAACATGGTGGTACATACAGGTTGAGGACTTGAGGTAGCCATACAACA
TTAATAAAGTAGCAGAAGAGCAAAATCATATAATAAGATGAAGAAATATTTCTGTTGATAACTT
ATCATATACAGGTGGGAGGAAGCTCAGTAAGCGACACATATTTCCTTAACTTCAGTGTTCTAGA
GCAAGGTGATGTTTTTGGATAAATGGGAATAATTATTTCTTCTCCCGAATTATCTATATGTTCA
AAAACCGTTAAAGATATTCCCGTTCAAGTTTGTAGTATCGGATATGTTCCTCTTAAGTTTACAC
TAGATCAGATCAAGCATACTCAAATCCAATGGATGTTGTTTGGATGTTTACCTGTTCTCAGGCT
TGTGTATTAGGTGGCCCTGATGAATGAAAGAAAGAATACCAAGTCAGCAAATTTCCATGAATGA
ATAGATGAGACCGGTAATCTACCTAGTGAATAAGACAAGGCTTATATACAACCAGGCATAAATT
AACCTTTGAAAAGCTGATGTTTGTGTTATGATCGACCAATGTGCTACACCGAGTGTGTGGTACG
CTCTGTGGCCTTCTGTCAGTCACTTCAAGTGCATACGGCATGAGATGGAGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.121049699
Functional Information
Coding potential Y
Potential coding position 31088548-31085042(+)
31088472-31085065(+)
31088550-31088529(-)
31085056-31088534(-)
Potential amino acid sequence MRWRACQTTVVAKMVVQIQKIQI*(+)
MIDQCATPSVWYALWPSVSHFKCIRHEMESLSNNCRRQNGCSDSKNSNMSSPFPNC*(+)
MPYALEVTDRRPQSVPHTRCSTLVDHNTNISFSKGHLIHKPENRNITFATISIGHNSDQKLVPF
LPNILQDINKRSCFASGAAGTEIIQFPQPIILYWLDCPNEKNMHDQVDHSKPFSSGSPPPGSTL
RQRQHRRKIKKSLTALPPSNVLVNNSSRSVTAPVRSDSDILHDDDKPPRKSPKKKGNKKGKHYR
RAVCKGLNLPSETHCEENIDAASPVEVLTDLLADKLSETSSSASSLVKEAHFGEENGGDSGCTG
SSNRTVGEIFSCKDVHYLNDESNNYERSLCARVSNSNDAIAYSLFKKLERDNSVNCSVNDEVRD
SCHPIGAHLSITHAEDSNDSFGCSSCCSKNVADSSNHTERVKCSSEACSSKTSLPVIPGRSRTR
LKEISSYSLTATNGVIGTNKNKHSGKYSSTSVWQKVEKLNVENTSRAGCMVDSAIQNKDVLENI
NKVAQHNLTRSMKINQRRKACNQHSPDERIEMEHAKENDALNSCQAFSRYKYKKQTSILYQQTS
LSSDQGTSQSSGNYHAPKNGIVMVPKNHLQQKDGLPMMQLVYDKDSSVDTGVGSNGSADGDGSS
QSGFEKAALASCNMGSYLVPQDTCEECTSTMQADPHYSSTENKAISTNSNSRNLCADPSPAEMD
ERCYVKLTMENTPQECPKLYSATGKQCKLYSAAAHVSQKWVAVGKKNILHFDGSETSAVDSSVL
TNCIPISANIGVETNVSSVLASANNEVNKLAAEISDKPNSSGHLDLRCQPHTDTGTDFNKMREA
VCDAYRAQQRVEDVQVIIGRPLADFEQFISSASPVLYCSTCPADRNFCSPEWVRDGLCFHQSTD
ITLSRIWQWYEEPCCYGLEVKAQDFRRSKGLWNSPHQFTTYFVPYLSAVQLFGQAKRASTGRVD
KEAAGMDVTSKTSPCPSSLPILTKLLPQQLRETISSSDLYTKGDQQFGNGELIFEFFESEQPFW
RRQLFDKLSISCRMHLK*(-)
MESSYLNFLNLNNHFGDDSCLTSSPSHAVCT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017